Trabecular Segmentation

Trabecular segmentation is the process of identifying and separating the lattice-like trabecular structure within cancellous bone images, enabling quantitative analysis of bone microarchitecture. In bioengineering, it typically uses image-processing or machine-learning methods to distinguish trabecular tissue from surrounding marrow and cortical bone based on intensity, spatial patterns, and structural boundaries. The resulting segmented images support measurements such as trabecular thickness, spacing, connectivity, and volume fraction. These data help researchers evaluate bone strength, model mechanical behavior, assess skeletal disease, and design or test biomaterials, implants, and tissue-engineering strategies.

Trabecular Segmentation - Related Videos

Research

JoVE Journal - Bioengineering

Outer-Boundary Assisted Segmentation and Quantification of Trabecular Bones by an Imagej Plugin

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2018

We present a workflow for segmenting and quantifying trabecular bones for 2D and 3D images based on the bone's outer boundary using an ImageJ plugin. This approach is more efficient and accurate than the current manual hand-contouring approach, and provides layer-by-layer quantifications, which are not available in current commercial software.

Trabecular Meshwork Response to Pressure Elevation in the Living Human Eye

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Cited by 7 •

2015

Trabecular meshwork (TM) migration into Schlemm’s canal space can be induced by acute pressure elevation by ophthalmodynamometer, and observed by spectral domain optical coherence tomography. The goal of this method is to quantify the morphometric response of the living outflow tract to acute pressure elevation in living tissues in situ.

Anterior Eye Segment Dissection: A Method to Isolate Cornea Bearing Anterior Segment from Porcine Eye

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2025

In this video, we demonstrate the dissection of the cornea-bearing anterior segment of the porcine eye. The isolated segment can be used for organ culturing to study the pathophysiology of eye disorders.

Research

JoVE Journal - Biology
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Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

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Cited by 10 •

2017

Segmentation of three-dimensional data from many imaging techniques is a major bottleneck in analysis of complex biological systems. Here, we describe the use of SuRVoS Workbench to semi-automatically segment volumetric data at various length-scales using example datasets from cryo-electron tomography, cryo soft X-ray tomography, and phase contrast X-ray tomography techniques.

Trabecular Bone Microarchitecture Evaluation in an Osteoporosis Mouse Model

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Cited by 3 •

2023

This protocol presents an economical and efficient method for quantitative evaluation of bone microarchitecture in a mouse model of osteoporosis by combining Hematoxylin-Eosin (HE) staining and micro-computed tomography (Micro-CT) techniques.

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