QFY improved frailty of 5xFAD mice
In this study, the CatWalk test, grip strength test, rotarod test, nest building test and aging score were performed to evaluate the effects of QFY on the frailty of 5xFAD mice.
Gait Walk test
After the treatment of QFY, CatWalk test was employed to collect the gait analysis parameters of mice. Compared with the WT, right hindlimb mean intensity (Figure 2A2, P < 0.01), right forelimb stride length (Figure 2A2, P < 0.01), right hindlimb stride length (Figure 2A1, P < 0.05), left forelimb stride length (Figure 2A1, P < 0.01; Figure 2A2, P < 0.05), left hindlimb stride length (Figure 2A1, P < 0.01; Figure 2A2, 2A3, P < 0.05), right forelimb stand (Figure 2A1, P < 0.05; Figure 2A3, P < 0.01), left forelimb and left hindlimb stand (Figure 2A3, P < 0.05), right forelimb stand index (Figure 2A3, P < 0.05), left forelimb stand index (Figure 2A1,2A3, P < 0.01), right hindlimb swing (Figure 2A1, Figure 2A3, P < 0.01; Figure 2A2, P < 0.05), right hindlimb step circle (Figure 2A3, P < 0.01), left hindlimb step circle (Figure 2A1, 2A2, 2A3, P < 0.05), right forelimb duty cycle (%) (Figure 2A1, P < 0.05) and right hindlimb body speed (Figure 2A2, P < 0.05) were significantly decreased in 5xFAD mice; right hindlimb swing speed (Figure 2A1, P < 0.01), left hindlimb swing speed (Figure 2A3, P < 0.01), right hindlimb duty cycle (%) (Figure 2A1, P < 0.01, Figure 2A2, P < 0.05), left hindlimb duty circle (%) (Figure 2A1, P < 0.05), right hindlimb body speed (Figure 2A3, P < 0.05) and left hindlimb body speed (Figure 2A3, P < 0.05) were significantly increased in 5xFAD mice. Donepezil could increase right hindlimb mean intensity (Figure 2A2, 2A3, P < 0.01), right forelimb stride length (Figure 2A2, P < 0.01) and decrease right hindlimb swing (Figure 2A3, P < 0.05) of 5xFAD mice significantly.
The treatment of QFY significantly increased right hindlimb mean intensity (Figure 2A1, P < 0.05 in 5.6 mg/kg QFY group; Figure 2A2, P < 0.01 in 2.8 mg/kg, 5.6 mg/kg and 11.2 mg/kg QFY group), right forelimb stride length (Figure 2A2, P < 0.05 in 2.8 mg/kg, 5.6 mg/kg and 11.2 mg/kg QFY group), left forelimb stride length (Figure 2A2, P < 0.05 in 11.2 mg/kg QFY group), left hindlimb stride length (Figure 2A1, P < 0.05 in 5.6 mg/kg and 11.2 mg/kg QFY group; Figure 2A2, P < 0.05 in 11.2 mg/kg QFY group), right forelimb stand index (Figure 2A1, P < 0.05 in 5.6 mg/kg QFY group), left hindlimb swing (Figure 2A1, Figure 2A2, P < 0.01 in 11.2 mg/kg QFY group), left hindlimb swing speed (Figure 2A2, P < 0.05 in 5.6 mg/kg QFY group), right forelimb (Figure 2A1, P < 0.05), right hindlimb (Figure 2A1, P < 0.05) and left forelimb (Figure 2A1, P < 0.01) body speed in 11.2 g/kg QFY group, right forelimb body speed variation (%) (Figure 2A1, P < 0.01 in 2.8 g/kg QFY group; Figure 2A2, P < 0.05 in 11.6 g/kg QFY group), right and left hindlimb body speed variation (%) (Figure 2A1, P < 0.01 in 2.8 g/kg QFY group), left forelimb body speed variation (%) (Figure 2A1, P < 0.01 in 2.8 g/kg QFY group) of 5xFAD mice. Moreover, right hindlimb swing (Figure 2A3, P < 0.05 in 11.2 g/kg QFY group), right hindlimb duty cycle (%) (Figure 2A2, P < 0.05 in 11.2 g/kg QFY group), left hindlimb duty cycle (%) (Figure 2A1, P < 0.05 in 11.2 g/kg QFY group) was significantly increased by QFY treatment. The above results show that QFY significantly improved the gait of 5xFAD mice, especially for male mice.
Grip strength
After QFY treatment for 182 days, the grip strength of the mice was detected using the grip strength experiment. The results showed that compared with the WT, the grip strength of the 5xFAD mice was significantly weakened (Figure 2B1, P < 0.01; Figure 2B2, P < 0.01); Compared with 5xFAD mice, donepezil can significantly enhance the grip strength of 5xFAD mice (Figure 2B1, P < 0.05; Figure 2B2, P < 0.01), and the grip strength of 5xFAD mice in 2.8 g/kg (Figure 2B1,B2,B3, P < 0.01), 5.6 g/kg (Figure 2B1,2B3, P < 0.01) and 11.2 g/kg (Figure 2B2, P < 0.01) QFY group is significantly enhanced. The results suggested that the grip strength of 5xFAD mice was significantly weakened, while low, medium, and high doses of QFY enhanced the grip strength of 5xFAD mice significantly.
Motor coordination ability
The rotarod test was conducted to detect motor coordination ability of mice after treatment of QFY. Compared with the WT group, the fall latency of the 5xFAD mice was significantly shortened (Figure 2C1, P < 0.05), while that of donepezil (Figure 2C1, P < 0.05) and 5.6 g/kg QFY (Figure 2C1, P < 0.05) was significantly prolonged compared with the 5xFAD mice. There were no differences between the sexes. The results showed that the motor coordination ability of 5xFAD mice was significantly impaired, and that donepezil and middle dose QFY were significantly heightened.
The degree of senescence
The aging score data showed that, compared with the WT group, the aging score of the 5xFAD mice increased significantly (Figure 2D1, P < 0.01; Figure 2D2, P < 0.01; Figure 2D3, P < 0.05). When compared with the 5xFAD mice, the aging score of donepezil group decreased significantly (Figure 2D1,2D2, P < 0.01), and the aging score of the QFY group decreased significantly (Figure 2D1,2D2, P < 0.01, P < 0.01 in 2.8 mg/kg QFY group; Figure 2D1,2D2, P < 0.01 and Figure 2D3, P < 0.05 in 5.6 mg/kg and 11.2 mg/kg QFY group). These results suggested that the 5xFAD mice showed obvious aging characteristics; both donepezil and QFY alleviated the aging degree of 5xFAD mice significantly.
Daily activity
We investigated daily activity of the mice by nest building test. The results showed that the nesting score of 5xFAD mice at 6 h (Figure 3A1, P < 0.001; Figure 3B1, P < 0.01) and 24 h (Figure 3A3,3B3, P < 0.01) was significantly decreased compared with the WT group. Donepezil significantly increased the 6 h (Figure 3B1, P < 0.05) and 12 h nesting scores of the 5xFAD mice (Figure 3A2, P < 0.05; 3B2, P < 0.01). The 6 h scores (Figure 3A1, P < 0.01; Figure 3B1,3C1, P < 0.05), 12 h score (Figure 3A2,3B2, P < 0.01), and 24 h score (Figure 3A3, P < 0.05) of the 2.8 g/kg QFY significantly increased. In 5.6 g/kg QFY group, the 6 h score (Figure 3A1, P < 0.01; 3B1, 3C1, P < 0.05), 12 h score (Figure 3A2, P < 0.001; 3B2, P < 0.01), and 24 h score (Figure 3A3, P < 0.05) were significantly increased compared to 5xFAD mice. Moreover, results of the present study showed that the 5xFAD mice in the QFY group have stronger nesting ability than before treatment (Figure 3D). These results indicated that the ability of daily activity in 5xFAD mice was impaired, and the administration of donepezil and the low-medium QFY significantly ameliorated this impairment.
The treatment of QFY modulates abnormal neuroendocrine in 5xFAD mice
To observe the effects of QFY on neuroendocrine, follicle stimulating hormone (FSH), luteinizing hormone (LH), estradiol (E2), testosterone (T), corticosterone (CORT) in the plasma of 5xFAD mice were detected by radioimmunoassay or ELISA analysis. In 5xFAD mice, the levels of E2 (Figure 4C1,4C2, P < 0.01), CORT (Figure 4E2, P < 0.05) were significantly increased compared to the WT mice. The contents of T were significantly decreased in female + male 5xFAD group (Figure 4D1, P < 0.05) and male 5xFAD group (Figure 4D2, P < 0.01), however, in female 5xFAD mice, its level was obviously increased (Figure 4D3, P < 0.05). QFY treatment could decrease E2 level (Figure 4C1, P < 0.05; 4C2, P < 0.01) in female +male group and male group of 5xFAD mice, while QFY increased its level significantly (Figure 4C3, P < 0.05). For T contents, QFY treatment increased its level significantly (Figure 4D2, P < 0.05). The above data suggested that the hormone level of 5xFAD mice was abnormal, and QFY regulated and restored the aberrant contents of FSH, E2, and T in 5xFAD mice.
The treatment of QFY restored gut microbiota imbalances in 5xFAD mice
Following 16S rRNA gene amplification and metagenomic shotgun sequencing of fecal gDNA extracts, a total of 650,948 high-quality sequences were obtained from the Illumina MiSeq platform, with the majority of reads (approximately 94%) ranging from 401 to 440 bp in length. After quality filtering and clustering, 594 OTUs were identified across all samples at a 97% similarity threshold. The depth and evenness of the sequencing libraries were validated using rarefaction curves, Shannon diversity curves, and rank-abundance distributions (Supplementary Figure 1), all of which indicated that the sequencing effort was sufficient to capture most microbial diversity and that species distributions were comparable across experimental groups.
The results by Principal Component Analysis (PCA) analysis showed that the gut microbiota of the WT group and 5xFAD mice administered with QFY were clustered together on the species level, while the gut microbiota of the 5xFAD mice group were distinct from the other two groups (Figure 5A1). Average PCA scores revealed that the average gut microbiota score of the 5xFAD group was significantly higher than that of the WT group (Figure 5A2, P < 0.05), while administration of QFY decreased this score (Figure 5A2). These results suggested that QFY facilitates advantageous changes in the structure of the gut microbial community.
LEfSe testing was used to further assess alterations in microbiota composition with QFY treatment. The structure and predominant microbiota in each group were also represented as a cladogram. Bacterial taxa were found to be changed between three groups at different levels of taxonomic classification starting at the phylum level (Figure 5B). In the WT group, three taxa were enriched including Prevotellaceae_UCG-001, lleibacterium and Adlercreutzia. In the 5xFAD group, six taxa were enriched (Mycoplasma, Allobaculum, norank_f_Lachnospiraceae, Helicobacter, bilophila and Rikenellaceae_RC9_gut_group). In QFY group, norank_f_Mitochondria, Coriobacteriaceae_UCG-002, norank_f_Ruminococcaceae and Enterorhabdus were enriched. The relative abundances of selected bacterial genera across the WT, 5xFAD, and QFY groups are summarized in Table 1.
Based on the obtained community abundance data, species across different microbial community groups were identified using rigorous statistical methods, and the significance of species abundance differences was evaluated to identify species that differed significantly between groups. Compared with WT controls, 5xFAD mice exhibited a significant decrease in the relative abundance of Adlercreutzia at the genus level (Figure 5C1, P < 0.05). At the species level, Bacteroides caecimuris was significantly increased, whereas Parabacteroides sp. was significantly decreased in the 5xFAD group (Figure 5C2,5C3, P < 0.05). Of note, QFY administration significantly alleviated these microbial alterations, suggesting a potential restorative effect on gut microbiota composition. Pearson correlation analysis revealed that the relative abundance of Adlercreutzia was significantly negatively correlated with the degree of senescence (Figure 5D1, r = -0.5757, P = 0.0247). Similarly, a significant negative correlation was observed between Adlercreutzia abundance and serum T level (Figure 5D2, r = -0.6764, P = 0.0056). These results suggest that higher Adlercreutzia abundance is associated with a lower senescence burden and lower T levels.
QFY intervention improves functional diversity of the gut microbiome in 5xFAD mice
Functional annotation of the gut microbial gene catalog was performed by querying against four public databases: the eggNOG (Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups) database for orthologous protein classification, the KEGG (Kyoto Encyclopedia of Genes and Genomes) database for metabolic pathway mapping, the CAZy (Carbohydrate-Active enZYmes) database for carbohydrate-active enzyme identification, and the VFDB (Virulence Factor Database) for putative virulence factor detection.
Among the known functions, the dominant functions (relative abundance >1%) of the mouse intestinal flora in each group were mainly distributed among 20 functions, of which the top 5 functions were L (Replication, recombination and repair), M (Cell wall/membrane/envelope biogenesis), K (Transcription), G (Carbohydrate transport and metabolism), and about 40% of the unknown functions S (Figure 6A1). The results showed that compared with the WT group, the relative abundance of COG1109 (Phosphoglucosamine mutase) (Figure 6A2, P < 0.01) and COG0296 (Alpha-amylase) (Figure 6A3, P < 0.01) in 5xFAD group significantly decreased, and the administration of QFY significantly improved the abnormal relative abundance of these functions (Figure 6A2, P < 0.01; Figure 6A3, P < 0.05).
KEGG pathway annotation revealed that the functional profiles of the gut microbiota were primarily distributed across six major categories: metabolism, genetic information processing, environmental information processing, cellular processes, organismal systems, and human diseases (Figure 6B1). At KEGG level 3, the 5xFAD group exhibited a significant decrease in the relative abundance of the acarbose and validamycin biosynthesis pathway (Figure 6B2, P < 0.001) and a significant increase in the toluene degradation pathway (Figure 6B3, P < 0.01) compared with the WT group. Notably, QFY administration significantly elevated the abundance of acarbose and validamycin biosynthesis (Figure 6B2, P < 0.05) and reduced the toluene degradation pathway (Figure 6B3, P < 0.01), suggesting that QFY treatment partially restored the abnormal functional profiles associated with the 5xFAD model.
CAZy family annotation revealed that the six most abundant families across all samples were glycoside hydrolases, glycosyl transferases, carbohydrate esterases, carbohydrate-binding modules, auxiliary activities and polysaccharide lyases (Figure 6C1). At the family level, compared with WT mice, the 5xFAD group exhibited a significant decrease in the relative abundance of GH43_2 (Figure 6C2, P < 0.001) and a significant increase in the GH138 (Figure 6C3, P < 0.001). Notably, QFY treatment significantly reversed these alterations, as evidenced by the significant upregulation of GH43_2 (Figure 6C3, P < 0.05) and the significant downregulation of GH138 (Figure 6C3, P < 0.01). These results suggest that QFY treatment partially restored the disease-associated dysregulation of CAZy family abundance.
Based on the VFDB annotation, the functional distribution of virulence factors in the gut microbiota was characterized across all groups. At the category level, the seven most abundant virulence factor categories across all samples were antiphagocytosis, secretion system, adherence, iron uptake system, regulation, toxin, and serum resistance (Figure 6D1). At the individual virulence factor level, compared with WT mice, the 5xFAD group exhibited a significant decrease in the relative abundance of streptococcal plasmin receptor/GAPDH (CVF123) (Figure 6D2, P < 0.05) and capsular polysaccharide (CVF282) (Figure 6D3, P < 0.01). Notably, QFY administration significantly increased the relative abundance of both CVF123 and CVF282 (Figure 6D2,6D3, P < 0.05), suggesting that QFY treatment partially restored the virulence factor profile toward WT levels.
DATA AVAILABILITY:
The data that support the findings of this study are available from the corresponding author upon reasonable request due to file size limitations.

Figure 1: The workflow of animals and drug administration. Please click here to view a larger version of this figure.

Figure 2: The treatment of Qi-Fu-Yin improved frailty of 5xFAD transgenic mice. (A1—A3) The gait in the Catwalk test. (B1—B3) Grip strength. (C1—C3) Latency to fall in the rotarod test. (D1—D3) Degree of senescence. The values are mean ± SEM; n = 3—13. *P < 0.05, **P < 0.01, vs WT, unpaired Student’s t test; #P < 0.05, ##P < 0.01, vs 5xFAD, one-way ANOVA analysis followed by Dunnett’s multiple comparisons test. Please click here to view a larger version of this figure.

Figure 3: The treatment of QFY improved the daily activity of 5xFAD mice. The score of nest building test for 6 h (A1,B1,C1), 12 h (A2,B2,C2) and 24 h (A3,B3,C3). (D) The photos of mice in each group. The values are mean ± SEM; n = 3—13. *P < 0.05, **P < 0.01, vs WT, unpaired Student’s t test; #P < 0.05, ##P < 0.01, vs 5xFAD, one-way ANOVA analysis followed by Dunnett’s multiple comparisons test. Please click here to view a larger version of this figure.

Figure 4: Effects of QFY on the level of neuroendocrine hormone in plasma of 5xFAD mice. The level of FSH (A1—A3), LH (B1—B3), E2 (C1—C3), T (D1—D3) and CORT (E1—E3) in the plasma. The values are mean ± SEM; n = 3-13. *P < 0.05, **P < 0.01, vs WT, unpaired Student’s t test; #P < 0.05, ##P < 0.01, vs 5xFAD by unpaired Student’s t test. Please click here to view a larger version of this figure.

Figure 5: Effects of Qi-Fu-Yin on the abundance and diversity of gut microbiota. (A1) PCA on the Species level, the first two principal coordinates PC1 and PC2 are plotted. (A2) PCA scores according to the sample coordinates. (B) The most differentially abundant taxa in each group identified by linear discriminant analysis (LDA) scores generated from the Linear discriminant analysis effect size (LEfSe) analysis. (C1—C3) Relative abundance of Adlercreutzia, Bacteroides_caecimuris and Parabacteroides_sp. (D1—D3) Correlation between Degree of senescence or T and Adlercreutzia. The values are mean ± SEM; n = 5. *P < 0.05, vs WT, unpaired Student’s t test. Statistical significance indicators (*p < 0.05, **p < 0.01) are based on uncorrected pairwise comparisons. FDR-adjusted q-values for all comparisons are available in Supplementary Table 1. Please click here to view a larger version of this figure.

Figure 6: Effects of QFY on the metagenomic function of 5xFAD mice. (A1) Percent of community abundance on function level. (A2—A3) The relative abundance of COG1109 (Phosphoglucosamine mutase) and COG0296 (Alpha-amylase). A: RNA processing and modification; B: Chromatin structure and dynamics; C: Energy production and conversion; D: Cell cycle control, cell division, chromosome partitioning; E: Amino acid transport and metabolism; F: Nucleotide transport and metabolism; G: Carbohydrate transport and metabolism; H: Coenzyme transport and metabolism; I: Lipid transport and metabolism; J: Translation, ribosomal structure and biogenesis; K: Transcription; L: Replication, recombination and repair; M: Cell wall/membrane/envelope biogenesis; N: Cell motility; O: Post-translational modification, protein turnover, chaperones; P: Inorganic ion transport and metabolism; Q: Secondary metabolites biosynthesis, transport and catabolism; S: Function unknown; T: Signal transduction mechanisms; U: Intracellular trafficking, secretion, and vesicular transport; V: Defense mechanisms; W: Extracellular structures; Y: Nuclear structure; Z: Cytoskeleton. (B1) Percent of community abundance on Pathway level 1. (B2—B3) Acarbose and validamycin biosynthesis, Toluene degradation. (C1) Percent of community abundance on class level. (C2—C3) GH 43-2 and GH 138. (D1) Percent of community abundance on class level. (D2—D3) Streptococcal plasmin receptor/GAPDH and Capsular polysaccharide. The values are mean ± SEM; n = 5. *P < 0.05, **P < 0.01, ***P < 0.001 vs WT group, #P < 0.05, ##P < 0.01 vs 5xFAD group by unpaired Student’s-t test. Statistical significance indicators (*p < 0.05, **p < 0.01) are based on uncorrected pairwise comparisons. FDR-adjusted q-values for all comparisons are available in Supplementary Table 1. Please click here to view a larger version of this figure.

Figure 7: Effects of QFY on frailty of 5xFAD transgenic mice by regulating the crosstalk between neuroendocrine function and gut microbiota. Please click here to view a larger version of this figure.
| Taxonomic level | Species name | WT | 5xFAD | Qi-Fu-Yin |
| Proportion (Mean ± SEM) | Proportion (Mean ± SEM) | Proportion (Mean ± SEM) |
| Genus | Helicobacter | 0.4180 ± 0.3045 | 1.7940 ± 0.8635** | 1.4730 ± 1.1910 |
| Genus | Allobaculum | 0.1872 ± 0.0897 | 1.9320 ± 1.2820* | 1.7930 ± 0.6330 |
| Genus | Rikenellaceae_RC9_gut_group | 0.3093 ± 0.2316 | 1.0160 ± 0.2400** | 0.7394 ± 0.2243 |
| Genus | Parasutterella | 0.8497 ± 0.1855 | 0.3825 ± 0.2297** | 0.3868 ± 0.1958 |
| Genus | Adlercreutzia | 0.7441 ± 0.4686 | 0.0612 ± 0.0303** | 0.4571 ± 0.2938# |
| Genus | Rikenella | 0.1431 ± 0.0871 | 0.6184 ± 0.4236* | 0.4428 ± 0.1970 |
| Genus | Blautia | 0.0238 ± 0.0173 | 0.2105 ± 0.1116** | 0.1157 ± 0.1007 |
| Genus | Anaerotruncus | 0.0287 ± 0.0075 | 0.0956 ± 0.0402** | 0.1146 ± 0.0569 |
| Genus | norank_f__Eubacterium_coprostanoligenes_group | 0.0345 ± 0.0271 | 0.0021 ± 0.0032* | 0.0042 ± 0.0058 |
| Genus | norank_f__norank_o__norank_c__Clostridia | 0.0298 ± 0.0167 | 0.0066 ± 0.0105* | 0.0362 ± 0.0318 |
| Genus | unclassified_c__Bacilli | 0.0029 ± 0.0042 | 0.0194 ± 0.0081** | 0.0179 ± 0.0127 |
| Genus | Harryflintia | 0.0045 ± 0.0036 | 0.0172 ± 0.0098* | 0.0114 ± 0.0096 |
| Genus | norank_f__Desulfovibrionaceae | 0.3140 ± 0.1372 | 0.5861 ± 0.2259 | 0.2205 ± 0.0904## |
| Genus | Erysipelatoclostridium | 0.0434 ± 0.0323 | 0.0182 ± 0.0094 | 0.1362 ± 0.0700## |
| Genus | Christensenellaceae_R-7_group | 0.0081 ± 0.0084 | 0.0006 ± 0.0014 | 0.0198 ± 0.0160# |
Table 1: Relative abundance of selected bacterial genera in the gut microbiota of WT, 5xFAD, and QFY-treated 5xFAD mice. Data are presented as the mean ± SEM (n = 5 per group). Raw pairwise P-values were calculated using a two-tailed unpaired Student’s t-test. *P < 0.05 and **P < 0.01 versus the WT group; #P < 0.05 and ##P < 0.01 versus the 5xFAD group. WT, wild type; QFY, Qi-Fu-Yin; SEM, standard error of the mean.
Supplementary Figure 1: The number and diversity of gut microbiota of each group. (A) Alpha diversity analysis of species abundance. (B) Alpha diversity analysis of diversity. (C) Rank-Abundance curves of species and community evenness. Please click here to download this file.
Supplementary Table 1: Raw p-values and FDR-adjusted q-values for pairwise comparisons of species-level taxa and functional categories. Please click here to download this file.