Tom Chou Departments of Biomathematics and Mathematics University of California at Los Angeles (UCLA) Biography Publications Institution JoVE Articles Tom Chou has not added a biography. If you are Tom Chou and would like to personalize this page please email our Author Liaison for assistance. Publications A Hierarchical Kinetic Theory of Birth, Death and Fission in Age-Structured Interacting Populations Journal of Statistical Physics. 2016 | Pubmed ID: 27335505 Swarming in Viscous Fluids: Three-dimensional Patterns in Swimmer- and Force-induced Flows Physical Review. E. Apr, 2016 | Pubmed ID: 27176395 Quantifying the Sensitivity of HIV-1 Viral Entry to Receptor and Coreceptor Expression The Journal of Physical Chemistry. B. Jul, 2016 | Pubmed ID: 27137677 Onset, Timing, and Exposure Therapy of Stress Disorders: Mechanistic Insight from a Mathematical Model of Oscillating Neuroendocrine Dynamics Biology Direct. Mar, 2016 | Pubmed ID: 27013324 Kinetic Theory of Age-structured Stochastic Birth-death Processes Physical Review. E. Jan, 2016 | Pubmed ID: 26871029 Mechanisms of Blood Homeostasis: Lineage Tracking and a Neutral Model of Cell Populations in Rhesus Macaques BMC Biology. Oct, 2015 | Pubmed ID: 26486451 Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis Biophysical Journal. Sep, 2015 | Pubmed ID: 26331254 First Assembly Times and Equilibration in Stochastic Coagulation-fragmentation The Journal of Chemical Physics. Jul, 2015 | Pubmed ID: 26156470 Fixation Times in Differentiation and Evolution in the Presence of Bottlenecks, Deserts, and Oases Journal of Theoretical Biology. May, 2015 | Pubmed ID: 25744205 Influence of the Disc-fovea Angle on Limits of RNFL Variability and Glaucoma Discrimination Investigative Ophthalmology & Visual Science. Oct, 2014 | Pubmed ID: 25301880 Distinct HIV-1 Entry Phenotypes Are Associated with Transmission, Subtype Specificity, and Resistance to Broadly Neutralizing Antibodies Retrovirology. Jun, 2014 | Pubmed ID: 24957778 Influence of Correction of Ocular Magnification on Spectral-domain OCT Retinal Nerve Fiber Layer Measurement Variability and Performance Investigative Ophthalmology & Visual Science. Apr, 2014 | Pubmed ID: 24781941 Iterative Graph Cuts for Image Segmentation with a Nonlinear Statistical Shape Prior Journal of Mathematical Imaging and Vision. Mar, 2014 | Pubmed ID: 24678141 Recidivism and Rehabilitation of Criminal Offenders: a Carrot and Stick Evolutionary Game PloS One. 2014 | Pubmed ID: 24454884 Combinatoric Analysis of Heterogeneous Stochastic Self-assembly The Journal of Chemical Physics. Sep, 2013 | Pubmed ID: 24089730 Measurement of the Optic Disc Vertical Tilt Angle with Spectral-domain Optical Coherence Tomography and Influencing Factors American Journal of Ophthalmology. Oct, 2013 | Pubmed ID: 23891337 Affinofile Profiling: How Efficiency of CD4/CCR5 Usage Impacts the Biological and Pathogenic Phenotype of HIV Virology. Jan, 2013 | Pubmed ID: 23217618 First Passage Times in Homogeneous Nucleation and Self-assembly The Journal of Chemical Physics. Dec, 2012 | Pubmed ID: 23277928 A Mechanical Model of Retinal Detachment Physical Biology. Aug, 2012 | Pubmed ID: 22733081 Tracking Monotonically Advancing Boundaries in Image Sequences Using Graph Cuts and Recursive Kernel Shape Priors IEEE Transactions on Medical Imaging. May, 2012 | Pubmed ID: 22156978 Coarsening and Accelerated Equilibration in Mass-conserving Heterogeneous Nucleation Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Jul, 2011 | Pubmed ID: 21867184 Diffusion-dependent Mechanisms of Receptor Engagement and Viral Entry The Journal of Physical Chemistry. B. Nov, 2010 | Pubmed ID: 21038861 A Mathematical Model of Intercellular Signaling During Epithelial Wound Healing Journal of Theoretical Biology. Sep, 2010 | Pubmed ID: 20685318 Frequency-dependent Chemolocation and Chemotactic Target Selection Physical Biology. May, 2010 | Pubmed ID: 20453297 Models of Dynamic Extraction of Lipid Tethers from Cell Membranes Physical Biology. May, 2010 | Pubmed ID: 20453295 Optimal Cytoplasmic Transport in Viral Infections PloS One. Dec, 2009 | Pubmed ID: 20046829 A Quantitative Affinity-profiling System That Reveals Distinct CD4/CCR5 Usage Patterns Among Human Immunodeficiency Virus Type 1 and Simian Immunodeficiency Virus Strains Journal of Virology. Nov, 2009 | Pubmed ID: 19692480 Enhancement of Charged Macromolecule Capture by Nanopores in a Salt Gradient The Journal of Chemical Physics. Jul, 2009 | Pubmed ID: 19624217 Enhancement of Cargo Processivity by Cooperating Molecular Motors Physical Chemistry Chemical Physics : PCCP. Jun, 2009 | Pubmed ID: 19506760 Accelerated Search Kinetics Mediated by Redox Reactions of DNA Repair Enzymes Biophysical Journal. May, 2009 | Pubmed ID: 19450467 Elite Suppressor-derived HIV-1 Envelope Glycoproteins Exhibit Reduced Entry Efficiency and Kinetics PLoS Pathogens. Apr, 2009 | Pubmed ID: 19360131 Mechanisms of Receptor/coreceptor-mediated Entry of Enveloped Viruses Biophysical Journal. Apr, 2009 | Pubmed ID: 19348746 Charge-transport-mediated Recruitment of DNA Repair Enzymes The Journal of Chemical Physics. Dec, 2008 | Pubmed ID: 19102557 Membrane Lipid Segregation in Endocytosis Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Aug, 2008 | Pubmed ID: 18850866 Degenerate Ground-state Lattices of Membrane Inclusions Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Jul, 2008 | Pubmed ID: 18763950 Exact Steady-state Velocity of Ratchets Driven by Random Sequential Adsorption Journal of Physics A: Mathematical and General. May, 2007 | Pubmed ID: 19081764 Brownian Ratchets Driven by Asymmetric Nucleation of Hydrolysis Waves Physical Review Letters. Dec, 2007 | Pubmed ID: 18233496 Peeling and Sliding in Nucleosome Repositioning Physical Review Letters. Aug, 2007 | Pubmed ID: 17930799 Dynamic Boundaries in Asymmetric Exclusion Processes Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Sep, 2007 | Pubmed ID: 17930227 Multistage Adsorption of Diffusing Macromolecules and Viruses The Journal of Chemical Physics. Sep, 2007 | Pubmed ID: 17867780 Stochastic Entry of Enveloped Viruses: Fusion Versus Endocytosis Biophysical Journal. Aug, 2007 | Pubmed ID: 17513379 Band Gaps and the Kelvin-Helmholtz Instability Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Jan, 2007 | Pubmed ID: 17358261 First Passage and Cooperativity of Queuing Kinetics Physical Review Letters. Oct, 2005 | Pubmed ID: 16383812 First Passage Times of Driven DNA Hairpin Unzipping Physical Biology. Sep, 2005 | Pubmed ID: 16224122 Steady-state Properties of a Totally Asymmetric Exclusion Process with Periodic Structure Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Jan, 2005 | Pubmed ID: 15697576 Clustered Bottlenecks in MRNA Translation and Protein Synthesis Physical Review Letters. Nov, 2004 | Pubmed ID: 15600884 Modeling the Emergence of the 'hot Zones': Tuberculosis and the Amplification Dynamics of Drug Resistance Nature Medicine. Oct, 2004 | Pubmed ID: 15378053 Physics of RecA-mediated Homologous Recognition Biophysical Journal. Sep, 2004 | Pubmed ID: 15345529 Physical Mechanisms of Gas and Perfluoron Retinopexy and Sub-retinal Fluid Displacement Physics in Medicine and Biology. Jul, 2004 | Pubmed ID: 15285260 Water Alignment, Dipolar Interactions, and Multiple Proton Occupancy During Water-wire Proton Transport Biophysical Journal. May, 2004 | Pubmed ID: 15111400 Chiral Molecule Adsorption on Helical Polymers Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Feb, 2004 | Pubmed ID: 14995481 Interplay of Chemotaxis and Chemokinesis Mechanisms in Bacterial Dynamics Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Aug, 2003 | Pubmed ID: 14525024 Ribosome Recycling, Diffusion, and MRNA Loop Formation in Translational Regulation Biophysical Journal. Aug, 2003 | Pubmed ID: 12885626 Bidirectional Retroviral Integration Site PCR Methodology and Quantitative Data Analysis Workflow Gajendra W. Suryawanshi*1,2, Song Xu*3, Yiming Xie1, Tom Chou3, Namshin Kim4, Irvin S. Y. Chen1,5, Sanggu Kim6 1UCLA AIDS Institute, University of California at Los Angeles (UCLA), 2Department of Microbiology, Immunology, & Molecular Genetics, University of California at Los Angeles (UCLA), 3Departments of Biomathematics and Mathematics, University of California at Los Angeles (UCLA), 4Personalized Genomic Medicine Research Center, Division of Strategic Research Groups, Korea Research Institute of Bioscience and Biotechnology, 5Department of Medicine, University of California at Los Angeles (UCLA), 6Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University (OSU) JoVE 55812 Genética
Bidirectional Retroviral Integration Site PCR Methodology and Quantitative Data Analysis Workflow Gajendra W. Suryawanshi*1,2, Song Xu*3, Yiming Xie1, Tom Chou3, Namshin Kim4, Irvin S. Y. Chen1,5, Sanggu Kim6 1UCLA AIDS Institute, University of California at Los Angeles (UCLA), 2Department of Microbiology, Immunology, & Molecular Genetics, University of California at Los Angeles (UCLA), 3Departments of Biomathematics and Mathematics, University of California at Los Angeles (UCLA), 4Personalized Genomic Medicine Research Center, Division of Strategic Research Groups, Korea Research Institute of Bioscience and Biotechnology, 5Department of Medicine, University of California at Los Angeles (UCLA), 6Department of Veterinary Biosciences, College of Veterinary Medicine, The Ohio State University (OSU) JoVE 55812 Genética