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Method Article

Oxygen Flux Measurements to Evaluate Mitochondrial Respiration in Living and Permeabilized Cells

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March 13th, 2026

In This Article

Abstract

Source: Elettra Leo1, Luiza H.D. Cardoso1, Sabine Schmitt1, Erich Gnaiger1

1Oroboros Instruments

This video explains how oxygen flux is used to assess mitochondrial respiration in living and permeabilized mammalian cells. It demonstrates the sequential use of digitonin, metabolic substrates, ADP, an uncoupler, and an inhibitor to characterize different respiratory states. The resulting oxygen flux profile reveals mitochondrial function and energy-coupling efficiency under defined conditions.

Protocol

1. Adding HEK 293T cells to the high-resolution respirometry chamber

  1. Add mitochondrial respiration medium MiR05 into the clean Oroboros chamber. Close the chamber by inserting the stopper and siphon off the excess medium from the stopper receptacle using the suction system.
  2. To add HEK 293T cells to the chamber by partial volume replacement, calculate the volume of the cell stock suspension required to reach an experimental cell concentration of 1 million/mL.
  3. Remove the stopper from the chamber.
  4. Remove a volume of MiR05 from the chamber corresponding to the calculated volume of the cell stock suspension using a pipette.
  5. Resuspend ....

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Results

Oxygen consumption graph, O2 concentration over time, experimental data analysis, metabolic rate.

Figure 1: High-resolution respirometry of HEK 293T cells. Trace of O2 concentration [&#.......

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
ADPMerck, Germany117105
Antimycin ASigma-Aldrich, USAA8674CAUTION H300 Fatal if swallowed, H400 short-term (acute) aquatic hazard
BSA fatty acid-freeSigma-Aldrich, USAA 6003Bovine serum albumin
CCCPSigma-Aldrich, USAC2759Carbonyl cyanide m-chlorophenyl hydrazone CAUTION H301 + H311 + H331 Toxic if swallowed, in contact with skin or if inhaled
DigitoninSigma-Aldrich, USAD5628CAUTION H301 Toxic if swallowed
MalateSigma-Aldrich, USAM1000CAUTION H319 Causes serious eye irritation.
MiR05-KitOroboros Instruments, Austria60101-01Mitochondrial respiration medium
PyruvateSigma-Aldrich, USAP2256CAUTION H317 May cause an allergic skin reaction
HEK 293T cellsAmerican Type Culture CollectionCRL-3216Obtained through LGC Standards (Wesel, Germany)

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