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1. Preparation of Sylgard-covered dishes, experimental chambers, and razor blades
- 35 mm Falcon Petri dishes coated with Sylgard elastomer are needed for the proper chopping of an isolated retina to obtain single photoreceptor cells. The elastomer is prepared according to the supplier's instructions and a small amount is poured into each dish to cover its bottom with a layer. Replace the dish covers after coating and store them. In a few days' time the elastomer hardens and the dishes are ready.
- Isolated photoreceptors need to stick to the bottom of the experimental chamber so that they are immobilized during the course of an imaging experiment. This is achieved by coating the bottoms of the chambers with poly-L-lysine or poly-L-ornithine. Add 200 μL of 0.01% solution of either one per chamber, and cover the chambers with a paper towel to protect them from dust. After the solution has dried, wash the chambers with distilled water and store in a closed box. Use within 2 weeks.
- To clean the chambers at the end of an experiment, wash them with 100% ethanol to remove any oil from the oil-immersion lens and cell debris. To remove the cell debris, use cotton-tipped applicators and carefully scrub the bottom of the chamber. Afterwards, wash with distilled water and let the chambers dry before re-coating.
- Cut double-edged razor blades into small pieces (8 from one blade) with a metal cutter.
2. Preparation of solutions
- The composition of solutions depends on the species. For amphibians, the Ringer's has (in mmol/L): 110 NaCl, 2.5 KCl, 1.6 MgCl2, 1 CaCl2, 5 HEPES, pH = 7.55. The pH should be adjusted to the final value with NaOH. For mammals, the Ringer's has (in mmol/L): 130 NaCl, 5 KCl, 0.5 MgCl2, 2 CaCl2, 25 hemisodium-HEPES, pH = 7.40. The Ringer's solution can be kept well-sealed at room temperature for a few months.
- Stock glucose solution, 1 mol/L, kept at -20 °C to avoid bacterial growth.
- On the day of the experiment, add glucose to the Ringer's solution to a final concentration of 5 mmol/L. At the end of the day, discard the Ringer's that contains glucose because it might grow bacteria.
3. Isolation of retinas
- For the proper excision of a retina it is important that the animal be dark-adapted for at least 2-3 hours before sacrifice. Animals should be dark-adapted in a suitable ventilated container in the dark-room.
- Fill two 35 mm Petri dishes half-way with Ringer's solution.
- Sacrifice the animal under dim red light and remove the eyes. Subsequently, all procedures are carried out under infrared light using a dissecting microscope or a camera with a video monitor.
- Remove any leftover tissue from the outside surface of the eye. Cut and remove the anterior part, then transfer the eyecup into one of the Petri dishes filled with Ringer's.
- Remove the vitreous and carefully separate the retina from the rest of the eyecup by pinching off or cutting any attachments. Gently lift the retina and separate it fully from the eyecup.
- Transfer the retina to the second Petri dish with a plastic transfer pipette. Keep the dish containing the retina in a light-tight box.
4. Isolation of single photoreceptor cells
- All procedures are carried out under infrared light. Cut a small piece of retina and transfer it with a plastic pipette to a Sylgard-covered dish. The volume of the solution containing the retina piece should be about 250 μL.
- Grab a small piece of razor blade with the blade holder -- the edge of the blade should be at approximately 45° angle to the holder. Flatten the piece of retina on the Sylgard layer and using the blade chop the piece of retina finely while keeping it stuck to the Sylgard layer.
- Transfer 200 μL of the solution containing the cells to an experimental chamber – leave any remaining piece of retina in the Sylgard-covered dish. Keep the chamber with the isolated cells in a light-tight box.
- Wait for 10 min for the cells to settle, then add 2-3 mL of Ringer's. At this stage, the isolated cells can be loaded with a particular fluorescent dye (for example Fura-2) according to the dye loading protocol.
- The cells can now be taken to the microscope stage for experiments.
5. Fluorescence imaging
- Transfer the chamber to the stage of the epifluorescence microscope. Adjust solution perfusion, temperature probes, infrared illumination, etc.
- Close the curtains and begin experiment. Turn on the infrared light inside the microscope cage, focus on the bottom of the experimental chamber, and move the stage looking for cells.
6. Representative Results:
Fig. 1 shows the morphology of healthy isolated rod and cone photoreceptors obtained with this protocol from a salamander (Ambystoma tigrinum) retina. Salamander cells have been used extensively for single cell fluorescence imaging studies because of their large size and their ability to survive for several hours after isolation from the retina. In addition, from a salamander retina one can regularly obtain both rod and cone photoreceptors.
One important criterion for the health of the cells is the presence of an intact ellipsoid (Fig. 1), the part of the cell where the mitochondria are concentrated. When the cells are viewed under DAPI optics, this concentration of mitochondria gives a strong fluorescence signal (Fig. 2) due to the presence of NADH. Lack of an intact ellipsoid is a sign of a damaged cell, generally unfit for experiment. Fig. 3 shows a damaged salamander rod photoreceptor, with a swollen cell body and a condensed nucleus. Such cells display much lower fluorescence under DAPI optics, but viewed under FITC optics show a strong FAD signal in the ellipsoid region (originating from oxidized flavin nucleotides and flavoproteins). Another criterion for the health of isolated photoreceptors is their ability to generate all-trans retinol (vitamin A) in their outer segments upon stimulation by light. The generation of vitamin A requires substantial amounts of NADPH, which depends on an intact metabolic machinery. Figures 4 and 5 show the formation of vitamin A in the outer segments of intact frog and mouse rod photoreceptors respectively.

Figure 1. Healthy single rod and cone photoreceptors. The cells were isolated from a tiger salamander retina. Phototransduction takes place in the outer segment and the ellipsoid is densely packed with mitochondria. Rods are responsible for dim light vision, cones for bright light vision.

Figure 2. Fluorescence of living salamander rod and cone. These are dark-adapted cells, showing strong NADH fluorescence in their respective ellipsoids and no significant vitamin A fluorescence in their outer segments. The capture of the fluorescence image represents their first exposure to visible light after the period of dark-adaptation.

Figure 3. Damaged salamander rod photoreceptor. The swollen cell body and the condensed nucleus are indicative of damage. The cell is oxidized and there is minimal NADH signal (DAPI optics), but much stronger FAD signal (FITC optics).

Figure 4. Frog rod with NADH and retinol. This is a healthy frog rod photoreceptor showing strong NADH fluorescence in the ellipsoid region. Before light exposure there is minimal fluorescence in the outer segment. Following light exposure, there is a significant increase in the outer segment fluorescence due to the formation of vitamin A.

Figure 5. Mouse rod with retinol. This is a healthy mouse rod photoreceptor showing significant outer segment fluorescence after light exposure due to the formation of vitamin A. The ellipsoid regions of mouse rod photoreceptors do not show a strong fluorescence signal.