Method Article

Dissociating and Culturing Neurons from Hippocampal Tissue Samples

July 8th, 2025

In This Article

Abstract

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Source: Servello, D. et al., A Microbiomechanical System for Studying Varicosity Formation and Recovery in Central Neuron Axons. J. Vis. Exp. (2018).

This video demonstrates the dissociation and culture of hippocampal neurons from hippocampal tissue samples using enzymatic and mechanical dissociations. The treatment with Ara-C inhibits the growth of non-neuronal cells, facilitating the selective growth of hippocampal neurons.

Protocol

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All procedures involving sample collection have been performed in accordance with the institute's IRB guidelines.

1. Dissection, Dissociation, and Culture of Hippocampal Neurons from Pregnant Mouse/Rat

  1. Dissection and dissociation of hippocampal neurons for culture
    1. Thaw protease enzyme solution (3 mg/mL protease 23 in Slice dissection solution, SLDS, Table 1) and pre-warm plating media (Table 2) at 37 °C.
    2. Dissect the hippocampus and rinse with SLDS.
      NOTE: Four hippocampi provide enough cells for one 24-well or one 6-well plate.
    3. Remove SLDS, add 2 mL of protease enzyme solution, and incubate the sample at 37 °C, 5% CO2, for 15 min.
    4. Wash the hippocampus explants with 5-10 mL of plating medium twice. Add 5 mL of plating medium. Dissociate hippocampal explants into single cells by generating a small vortex using a pipette with a 1-mL plastic tip. Pipette up and down about 40 times, avoiding the formation of oxygen bubbles, until the solution becomes cloudy and no large pieces of explant remain.
      NOTE: Remember to leave some media during washes, the hippocampal explants should remain submerged in the medium during the whole process.
    5. Centrifuge the cells at 1,125 x g for 3 min. Remove the supernatant with the cells submerged in the media. Resuspend the cells in 145 mL of plating media. Add 1 mL/well of the cell suspension to a 24-well plate (3 mL/well to a 6-well plate).    
      NOTE: 145 mL of plating media is used to produce a cell suspension that has a low cell density. This volume will allow the plating of cells into six 24-well plates, eight 6-well plates, or various combinations of 24- or 6-well plates, depending on the experiments to be conducted. Each well of the 24-well plate will have about 3 x 104 cells.
    6. Incubate the cells in the plating media at 37 °C, 5% CO2 for 2-4 h, then remove all plating media and replace it with fresh maintenance media.
    7. After 2 days (2 days in vitro, 2DIV), replace half of the media with 2 µM Ara-C (arabinosylcytosine) dissolved in maintenance media, which inhibits growth of fibroblasts, endothelial, and glial cells. After exposing cells to Ara-C for two days, replace the media with fresh maintenance media.

Table 1: Coverslip coating solution. Provides the recipe for preparing the coverslip coating solution used to adhere cultured cells to the coverslips.

Coverslip coating solution 
780 µLAcetic acid17 mM stock: 50 µL acetic acid in 50 mL of H2O
200 µLPoly-D-lysine (0.5 mg/mL stock)
20 µLRat tail collagen (3 mg/mL stock)
The total volume is determined based on the number of coverslips to be coated.

Table 2: Cell culture media recipes. Provides the recipes for preparing media utilized in the culturing of primary hippocampal neuron cells.

1x Slice dissection solution (SLDS), filtered, pH= 7.4, store at 4 °C
1 LddH2O
82 mMNa2SO4
30 mMK2SO4
10 mMHEPES (free acid)
10 mMD-glucose
5 mMMgCl2
0.00%Phenol red (optional)
Plating Media (PM, filter, store at 4 °C)
439 mLMEM Earle's Salts
50 mLFBS
11.25 mL20% D-glucose 
5 mL Sodium pyruvate (100 mM,)
62.5 µLL-glutamine (200 mM)
5 mLPenicillin/Streptomycin (P/S, 100x)
Maintenance Media (MM, filter, store at 4 °C)
484 mLNeurobasal 
10 mL B27 50x supplement 
1.25 mLL-glutamine (200 mM)
5 mL100x P/S
All solutions are sterilized using a filter with 0.2 mm pore size.

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Disclosures

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No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
12 mm coverslipsWarner Instruments64-0702For 24-well plate
25 mm coverslipsFisher Scientific12-545-102For 6-well plate
Acetic acidFisher ScientificA38-212
Poly-D-lysineSigmaP6407
Rat tail collagenRoche11 179 179 001
10X PBSNational DiagnosticsCL-253
Na2SO4Fisher ScientificS373-500
K2SO4Fisher ScientificP304-500
HEPESFisher ScientificBP410-500
D-glucoseFisher ScientificD16-500
MgCl2Fisher ScientificBP214-500
NaOHFisher ScientificSS255-1
Protease enzymeSigmaP4032
FBSGibco26140
Sodium pyruvateGibco11360-070
L-glutamineGibco25030081
Penicillin/Streptomycin 100x (P/S)Gibco15140122
MEM Earle's SaltsGibco11090
B27 supplementGibco17504-044
NeurobasalGibco21103-049
Arabinosylcytosine (Ara-C)Sigma147-94-4
Opti-MEM mediaGibco31985-070

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Tags

Hippocampal NeuronsCell DissociationEnzymatic DissociationMechanical DissociationAra C TreatmentPoly D Lysine CoatingNeuron CultureTissue DigestionCentrifugationPlating Medium

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