Method Article

Measuring Neural Activity in a Mouse Brain Slice after Prolonged Incubation

July 8th, 2025

In This Article

Abstract

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Source: Cameron, M. A., et al., Prolonged Incubation of Acute Neuronal Tissue for Electrophysiology and Calcium-imaging. J. Vis. Exp. (120), (2017)

This video demonstrates a technique for measuring neuronal activity in mouse brain slices using calcium imaging and electrophysiological recordings. By perfusing the tissue with potassium ions and recording intracellular calcium changes through high-speed digital imaging, this method reveals real-time neuronal responses.

Protocol

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All procedures involving animal samples have been reviewed and approved by the appropriate animal ethical review committee.

1. Calcium Dye Loading

  1. Select calcium dyes based on the preference of the individual researcher. Here we use Fluo-8AM or Fluo-4AM. However, this method can be applied to other dyes as well: dissolve calcium dyes in DMSO to a 1 mM solution and 1% block copolymers (e.g., pluronic acid-127) to a final volume of 50 µL and sonicate for 10 min.
  2. Add solution to aCSF to a final concentration of 10 µM, 0.01% block copolymers for brain slices.
    1. For adult animals, (>12 weeks), pipette the dyes (50 µL) directly onto the brain slices, and maintain for 75 min to allow better penetration of the dye into the deep layers.
    2. To ensure adequate oxygenation of the submerged slice during dye incubation, prepare a glass loading chamber with a closed lid (circular jar of diameter 2.5 cm, 3.5 cm height) with calcium dyes diluted in 2.5 mL of aCSF. Oxygenate continuously with 95% O2/5% CO2. Do not bubble.
  3. Following dye loading, wash the tissue with aCSF and transfer it to the incubation system, slowly reducing the temperature to 15 - 16 °C until it is ready for experimental use.

2. Electrophysiological Recordings and Imaging

  1. Place tissue in a submerged recording chamber under a microscope and perfuse with oxygenated aCSF at a flow rate of 4 - 5 mL/min either at RT (~22 °C) or physiological temperature (~35 °C). Hold the tissue in place by using a custom-made ''harp,'' made of nylon or gold threads stretched and glued across a U-shaped piece of gold or platinum wire.
  2. For electrophysiology:
    1. Prepare recording pipettes from 1.5 mm (1.19 mm ID) borosilicate glass using a micropipette puller to achieve a final resistance of 5-6 MΩ.
    2. Fill the pipette with 3 - 4 µL of internal solution and visualize cells under infrared Differential Interference Contrast (IR-DIC) using a CCD camera. The intracellular solution should be carefully tailored to each experiment to achieve experimental outcomes.
    3. Position the pipette while maintaining positive pressure applied through a suction port on the pipette holder on the membrane of a cell using a micromanipulator. No prior membrane scraping is required since the ILM has been removed from the retina. Once the pipette is on the cell, apply gentle negative pressure to the pipette to achieve a gigaohm seal. Then, rupture the cell membrane with a brief amount of negative pressure.
    4. Make whole-cell current- or voltage-clamp recordings using standard techniques as appropriate.
  3. Calcium-imaging:
    1. For a single excitation wavelength of Fluo-4, filter excitation light through a 460 - 490 nm bandpass filter and emitted light through a 515 - 550 nm bandpass filter. Use a high-speed digital camera for the fastest and most sensitive recording. Acquire images as required.
    2. Measure alterations in fluorescence as a function of time either at a single wavelength (Fluo-4).

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Disclosures

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No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Sodium ChlorideSigma Aldrich VETECV800372
Potassium chlorideSigma AldrichP9333
D-glucoseSigma AldrichG5767
Sodium bicarbonateSigma AldrichS6014
Sodium phosphate monobasicSigma AldrichS2554
Magnesium chlorideSigma AldrichM9272
Calcium chlorideSigma Aldrich223506
Dimethyl sulfoxide anhydrousSigma Aldrich276855
Pluronic F-127 Low UV absorbance*Life technologiesP-686720% solution in DMSO
Fluo-4 AMLife TechnologiesF23917
Fluo-8 AMAbcamAb142773
Fixed Stage Upright MicroscopeOlympusBX51WI
Microscope ObjectiveOlympusXLUMPlanFLN 20x/1.00w20X
Microscope ObjectiveOlympusLUMPlanFLN 60x/1.00w60X
CCD CameraAndorIxon +
Patch clamp amplifierMolecular DevicesMultiClamp 700B
Data acquisition systemMolecular DevicesDigidata 1440AAxon Digidata® System
Borosilicate glass capillariesSutter Instrument CoBF150-86-10
Microelectrode pullerSutter Instrument CoP-97Flaming/Brown type micropipette puller
Recording/perfusion chamberWarner InstrumentsRC-40LPLow Profile Open Bath Chambers
SoftwareMolecular DevicespClamp 10.2
Andor iQ Live Cell Imaging SoftwareAndorAndor iQ3
Temperature ControllerTE TechnologyTC-36-25 RS232

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Tags

Mouse Brain SliceCalcium ImagingElectrophysiological RecordingWhole Cell Patch ClampHigh Potassium PerfusionIntracellular Calcium MeasurementFluorescence ImagingMicropipette PullerCCD CameraBandpass Filter

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