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Method Article

Optogenetic Stimulation and Electrophysiological Recording of Synaptic Events in Rat Brain Slices

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July 8th, 2025

In This Article

Abstract

Source: Kinnavane, L., et al. Ex Vivo Optogenetic Interrogation of Long-Range Synaptic Transmission and Plasticity from Medial Prefrontal Cortex to Lateral Entorhinal Cortex. J. Vis. Exp. (2022)

This video demonstrates the procedure for studying synaptic efficiency in the lateral entorhinal cortex (LEC) by optogenetically stimulating medial prefrontal cortex (mPFC) axons and recording the responses of pyramidal neurons in the LEC. This method combines patch-clamp recordings with synaptic activation by light stimulation to study synaptic plasticity.

Protocol

All procedures involving animal samples have been reviewed and approved by the appropriate animal ethical review committee.

1. Electrophysiology and optogenetic stimulation

  1. Identification of target cell.
    1. Place the slice into a submerged recording chamber at 34 °C perfused with artificial cerebrospinal fluid (aCSF) at a rate of 2 mL/min by a peristaltic pump. Immobilize the slice using a slice anchor.
    2. Under the low magnification (4x) objective of a widefield microscope using oblique infrared illumination, navigate to lateral entorhinal cortex (LEC) layer 5. Measure the....

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Results

Optical setup diagram: LED excitation, emission filters, camera for cell imaging; photonic study.
Figure 1: Slice collection chamber and optical configuration for visualized whole-cell recordings, optogenetic excitation, and identification of tdTomato-positive neurons. (A) The slice collection chamber14 is custom-made from a microcentr.......

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
3 way luer valveCole-ParmerWZ-30600-02
40x objectiveOlympusLUMPLFLN40XW
4-aminopyridineHello BioHB1073
4x objectiveOlympusPLN4X/0.1
Achromatic lensEdmund Optics49363Focusses visual spectrum and near-IR
Benchtop microcentrifugeBenchmark ScientificC1005*
BiocytinSigma-AldrichB4261
Borosillicate glass capillaryWarner InstrumentsG150F-6
CaCl2Sigma-AldrichC5670
Camera - Qimaging Retiga ElectroPhotometrics01-ELECTRO-M-14-C
CarbacholTocris2810
Chlorhexidine surgical scrubVetaseptXHG008
ClippersAndis22445AGC Super 2-Speed Detachable Blade Clipper
Collimation condenser lensThorLabsACL2520-A
CoverslipsFisher Scientific Ltd10011913
CryostatLeicaCM3050 S
CsMeSO4Sigma-AldrichC1426
Cyanoacrylate glueRapid Electronics Ltd84-4557
Data acquisition deviceNational InstrumentsUSB-6341 BNC
D-glucoseSigma-AldrichG8270
Dichroic mirror 500 nm long-passEdmund Optics69899
Dichroic mirror 600 nm long-passEdmund Optics69901
Dichroic mirror cubeThorLabsCM1-DCH/M
EGTAMillpore324626
Electrode holder with side portHEKA895150
Emission filterChroma59022m
Excitation filterChromaET570/20x
Eye gelDechraLubrithal
Fine paint brushScientific Laboratory SuppliesBRU2052
GuillotineWorld Precision InstrumentsDCAP
HEPESSigma-AldrichH3375
Hydrogen peroxide solutionSigma-AldrichH100930% (w/w)
IsofluraneHenry Schein988-3245
IsopentaneSigma-AldrichM32631
KClSigma-AldrichP3911
k-gluconateSigma-AldrichG4500
Kinematic fluorescence filter cubeThorLabsDFM1T1
LED driverThorLabsLEDD1B
MgATPSigma-AldrichA9187
MgClSigma-AldrichM2670
MgSO4Sigma-AldrichM7506
Microelectrode pullerSutter instrumentsP-87
Microinjection syringeHamilton7634-01/00
Microinjection syringe needleHamilton7803-05Custom specification: gauge 33, length 15mm, point style 4 - 12°
Microinjection syringe pumpWorld Precision InstrumentsUMP3T-1
Mounted blue LEDThorLabsM470L5
Na2HPO4.7H2OSigma-AldrichS9390
NaClSigma-AldrichS9888
NaGTPSigma-AldrichG8877
NaH2PO4Sigma-AldrichS0751
NaH2PO4.H2OSigma-AldrichS9638
NaHCO3Sigma-AldrichS5761
NIR LEDOSRAMSFH4550Used for refracted IR imaging of slice, differential interference contrast (DIC) optics is another commonly used method
ParaformaldehydeSigma-Aldrich158127
ParaformaldehydeSigma-AldrichP6148
Patch clamp amplifierMolecular Devices700A
Peristaltic pumpWorld Precision InstrumentsMinistar
Poly-L-lysine coated microscope slidesFisher Scientific Ltd23-769-310
Recording chamberWarner InstrumentsRC-26G
Slice anchorWarner InstrumentsSHD-26-GH/15
Stereotaxic holder for micro drillHarvard Apparatus75-1874
SucroseSigma-AldrichS0389
Surgical MicroscopeCarl ZeissOPMI 1 FR pro
Syringe filter for intracellular recording solutionThermo Scientific Nalgene171-0020
Upright fluorescence microscopeLeicaDM6 B
Solution
aCSF
sucrose cutting solution
PFA

Tags

Patch ClampLight PulsesPyramidal NeuronsMedial Prefrontal CortexLateral Entorhinal CortexWhole Cell Configuration