This work describes a novel method for selectively targeting subcellular organelles in plants, assayed using the BioRad Gene Gun.
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Method Article
This work describes a novel method for selectively targeting subcellular organelles in plants, assayed using the BioRad Gene Gun.
In order to target a single protein to multiple subcellular organelles, plants typically duplicate the relevant genes, and express each gene separately using complex regulatory strategies including differential promoters and/or signal sequences. Metabolic engineers and synthetic biologists interested in targeting enzymes to a particular organelle are faced with a challenge: For a protein that is to be localized to more than one organelle, the engineer must clone the same gene multiple times. This work presents a solution to this strategy: harnessing alternative splicing of mRNA. This technology takes advantage of established chloroplast and peroxisome targeting sequences and combines them into a single mRNA that is alternatively spliced. Some splice variants are sent to the chloroplast, some to the peroxisome, and some to the cytosol. Here the system is designed for multiple-organelle targeting with alternative splicing. In this work, GFP was expected to be expressed in the chloroplast, cytosol, and peroxisome by a series of rationally designed 5’ mRNA tags. These tags have the potential to reduce the amount of cloning required when heterologous genes need to be expressed in multiple subcellular organelles. The constructs were designed in previous work11, and were cloned using Gibson assembly, a ligation independent cloning method that does not require restriction enzymes. The resultant plasmids were introduced into Nicotiana benthamiana epidermal leaf cells with a modified Gene Gun protocol. Finally, transformed leaves were observed with confocal microscopy.
This work is a metabolic engineering / synthetic biology project wherein plant cells are engineered to express a reporter protein in multiple organelles but with only a single DNA construct.
One approach to target proteins to more than one location involves cloning multiple genetic copies, each containing a different localization peptide. Each copy must be introduced by successive retransformation, or alternatively, by backcrossing single transforms1. This involves additional cloning, and is limited by one localization tag per terminus.
Another way to localize a protein to multiple locations is through....
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1. Design of Alternatively-spliced Sequences for Multiple Organelle Targeting
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The design effort was a result of significant planning. Novel to this project is the use of alternative splicing to create a pre-mRNA that is translated into differentially expressed proteins. These proteins are expressed in different organelles, in this case the chloroplast, peroxisome and/or cytosol. We adapted natural Arabidopsis gene that is alternatively spliced6, and placed known chloroplast6 and peroxisome17 targeting sequences in alternate exons (TriTag-1 and TriTag-2). T.......
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In this study, simple strategies are described for localizing a single transgenic protein to multiple cellular compartments in plants. The goal was to design construct that would express a single gene in more than one organelle in Nicotiana benthamiana. Strategies include rational design of GFP-based DNA constructs, Gibson assembly, delivery of the plasmids to leaf cells with the Gene Gun, and observation of the results with confocal microscopy.
Three different short, N-terminal tags .......
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The authors have nothing to disclose.
The authors would like to thank Jen Sheen of Massachusetts General Hospital for the generous donation of Nicotiana benthamiana seedlings. Jen Bush helped us greatly in advice in growing plants and setting up a growth chamber area. Tom Ferrante of the Wyss Institute offered crucial help with confocal microscopy. The authors would especially like to thank Don Ingber of Children’s Hospital Boston and the Wyss Institute for the generous donation of a Gene Gun and associated supplies. Funding for this project was provided through a cooperative agreement with the Department of Energy Advanced Research Projects Agency (ARPA- E Award # DE-000079) for PAS, JCW, ....
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| Oligonucleotide primers | IDT | (custom) | Design specifically for construct |
| GeneBlocks | IDT | (custom) | 500 bp oligonucleotides |
| ApE software | U Utah | (download) | http://biologylabs.utah.edu/jorgensen/wayned/ape/ |
| MinElute kit | Qiagen | 28004 | Used to purify PCR products |
| QIAprep spin miniprep kit | Qiagen | 27104 | Used to prepare cloning-appropriate amounts of plasmid |
| Phusion Master Mix with GC Buffer | NEB | M0532S | Used to PCR-amplify gene of interest |
| Gibson assembly reaction mix | NEB | E2611L | Master mix of the following 9 ingredients |
| 1 M Tris-HCl pH7.5 | Teknova | T1075 | Gibson assembly mix |
| 1 M MgCl2 | G Biosiences | 82023-086 | Gibson assembly mix |
| dNTP mix | Fermentas | R0192 | Gibson assembly mix |
| 1 M DTT | Fermentas | R0861 | Gibson assembly mix |
| PEG-8000 | Affymetrix | 19966 | Gibson assembly mix |
| NAD | Applichem | A1124,0005 | Gibson assembly mix |
| T5 exonuclease | Epicentre | T5E4111K | Gibson assembly mix |
| Phusion polymerase | NEB | F530S | Gibson assembly mix |
| Taq DNA ligase | NEB | M0208L | Gibson assembly mix |
| Gibthon.org | Website to simplify calculations | ||
| Plasmid PLUS Maxi kit | Qiagen | 12963 | Used to prepare DNA for gene gun bullets |
| Gene Gun system | BioRad | 165-2451 | Includes all parts necessary |
| Nicotania benthamiana | (n/a) | (n/a) | Gift of Jen Sheen, MGH |
| Confocal microscope | Leica | SP5 X MP | Imaging of resultant cells |
| Deep well slides | Electron Microscopy Sciences | 71561-01 | Used for confocal imaging |
| A Plasmid Editor (ApE) | University of Utah | http://biologylabs.utah.edu/jorgensen/wayned/ape | |
| Gibthon:Ligation calculator | http://django.gibthon.org/tools/ligcalc/ |
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