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Method Article

Transient Gene Expression in Tobacco using Gibson Assembly and the Gene Gun

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DOI:

10.3791/51234

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April 18th, 2014

In This Article

Summary

This work describes a novel method for selectively targeting subcellular organelles in plants, assayed using the BioRad Gene Gun.

Abstract

In order to target a single protein to multiple subcellular organelles, plants typically duplicate the relevant genes, and express each gene separately using complex regulatory strategies including differential promoters and/or signal sequences. Metabolic engineers and synthetic biologists interested in targeting enzymes to a particular organelle are faced with a challenge: For a protein that is to be localized to more than one organelle, the engineer must clone the same gene multiple times. This work presents a solution to this strategy: harnessing alternative splicing of mRNA. This technology takes advantage of established chloroplast and peroxisome targeting sequences and combines them into a single mRNA that is alternatively spliced. Some splice variants are sent to the chloroplast, some to the peroxisome, and some to the cytosol. Here the system is designed for multiple-organelle targeting with alternative splicing. In this work, GFP was expected to be expressed in the chloroplast, cytosol, and peroxisome by a series of rationally designed 5’ mRNA tags. These tags have the potential to reduce the amount of cloning required when heterologous genes need to be expressed in multiple subcellular organelles. The constructs were designed in previous work11, and were cloned using Gibson assembly, a ligation independent cloning method that does not require restriction enzymes. The resultant plasmids were introduced into Nicotiana benthamiana epidermal leaf cells with a modified Gene Gun protocol. Finally, transformed leaves were observed with confocal microscopy.

Introduction

This work is a metabolic engineering / synthetic biology project wherein plant cells are engineered to express a reporter protein in multiple organelles but with only a single DNA construct.

One approach to target proteins to more than one location involves cloning multiple genetic copies, each containing a different localization peptide. Each copy must be introduced by successive retransformation, or alternatively, by backcrossing single transforms1. This involves additional cloning, and is limited by one localization tag per terminus.

Another way to localize a protein to multiple locations is through....

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Protocol

1. Design of Alternatively-spliced Sequences for Multiple Organelle Targeting

  1. Determine the sites for final protein expression. For this work, the interest is in targeting the chloroplast, peroxisome, and cytosol.
  2. Use the literature to identify protein and DNA sequences known to target proteins to organelles of interest. In this case a chloroplast targeting sequence from Arabidopsis thaliana L-isoaspartate methyltransferase6,15, and a peroxisome targeting sequence from Arabidopsis thaliana transthyretin-like S-allantoin synthase16,17 were determined.
  3. Identify an alternative-splici....

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Results

The design effort was a result of significant planning. Novel to this project is the use of alternative splicing to create a pre-mRNA that is translated into differentially expressed proteins. These proteins are expressed in different organelles, in this case the chloroplast, peroxisome and/or cytosol. We adapted natural Arabidopsis gene that is alternatively spliced6, and placed known chloroplast6 and peroxisome17 targeting sequences in alternate exons (TriTag-1 and TriTag-2). T.......

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Discussion

In this study, simple strategies are described for localizing a single transgenic protein to multiple cellular compartments in plants. The goal was to design construct that would express a single gene in more than one organelle in Nicotiana benthamiana. Strategies include rational design of GFP-based DNA constructs, Gibson assembly, delivery of the plasmids to leaf cells with the Gene Gun, and observation of the results with confocal microscopy.

Three different short, N-terminal tags .......

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Disclosures

The authors have nothing to disclose.

Acknowledgements

The authors would like to thank Jen Sheen of Massachusetts General Hospital for the generous donation of Nicotiana benthamiana seedlings. Jen Bush helped us greatly in advice in growing plants and setting up a growth chamber area. Tom Ferrante of the Wyss Institute offered crucial help with confocal microscopy. The authors would especially like to thank Don Ingber of Children’s Hospital Boston and the Wyss Institute for the generous donation of a Gene Gun and associated supplies. Funding for this project was provided through a cooperative agreement with the Department of Energy Advanced Research Projects Agency (ARPA- E Award # DE-000079) for PAS, JCW, ....

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Oligonucleotide primersIDT(custom)Design specifically for construct
GeneBlocksIDT(custom)500 bp oligonucleotides
ApE softwareU Utah(download)http://biologylabs.utah.edu/jorgensen/wayned/ape/
MinElute kitQiagen28004Used to purify PCR products
QIAprep spin miniprep kitQiagen27104Used to prepare cloning-appropriate amounts of plasmid
Phusion Master Mix with GC BufferNEBM0532SUsed to PCR-amplify gene of interest
Gibson assembly reaction mixNEBE2611LMaster mix of the following 9 ingredients
1 M Tris-HCl pH7.5TeknovaT1075Gibson assembly mix
1 M MgCl2G Biosiences82023-086Gibson assembly mix
dNTP mixFermentasR0192Gibson assembly mix
1 M DTTFermentasR0861Gibson assembly mix
PEG-8000Affymetrix19966Gibson assembly mix
NADApplichemA1124,0005Gibson assembly mix
T5 exonucleaseEpicentreT5E4111KGibson assembly mix
Phusion polymeraseNEBF530SGibson assembly mix
Taq DNA ligaseNEBM0208LGibson assembly mix
Gibthon.orgWebsite to simplify calculations
Plasmid PLUS Maxi kitQiagen12963Used to prepare DNA for gene gun bullets
Gene Gun systemBioRad165-2451Includes all parts necessary
Nicotania benthamiana(n/a)(n/a)Gift of Jen Sheen, MGH
Confocal microscopeLeicaSP5 X MPImaging of resultant cells
Deep well slidesElectron Microscopy Sciences71561-01Used for confocal imaging
A Plasmid Editor (ApE) University of Utah http://biologylabs.utah.edu/jorgensen/wayned/ape
Gibthon:Ligation calculatorhttp://django.gibthon.org/tools/ligcalc/

References

  1. Que, Q., et al. Trait stacking in transgenic crops: challenges and opportunities. GM crops. 1 (4), 220-229 (2010).
  2. Reddy, A. S. N., Rogers, M. F., Richardson, D. N., Hamilton, M., Ben-Hur, A.

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Tags

Tobacco Leaf Epidermal CellsConfocal MicroscopyChloroplast TargetingPeroxisome TargetingAlternative SplicingGFP ExpressionPlasmid Construction