The overall goal of this method is to accurately measure the glycolytic rate of cells using extracellular flux analysis. Quantitative measurement of glycolytic rate using extracellular acidification is the desired endpoint of many experiments. However, the total rate of extracellular acidification is the sum of two components: respiratory acidification, in the form of CO2 (which hydrates to H2CO3 then dissociates to HCO3- + H+), and glycolytic acidification, in the form of lactate- + H+.
The contributions of CO2 to total extracellular acidification have until recently been considered negligible in the measurement platform used here, the XF24 analyzer 7. However, it is clear in multiple other systems that CO2 can be a major contributor to extracellular acidification4-5. Multiple papers acknowledge this contribution, but do not attempt direct quantitation of CO2-derived acid 3,8,9. We recently demonstrated quantitatively that CO2 production is a significant source of extracellular acidification in this system 6. Moreover, though there are multiple metabolic pathways that generate CO2 from glucose catabolism, those carried out by matrix dehydrogenases in the citric acid cycle are the overwhelming contributors and all other sources generate amounts of CO2 that are within experimental error 6.
Without correcting for CO2 production, extracellular acidification is therefore an ambiguous indicator of glycolytic rate and cannot be used quantitatively. Our previous publication highlights several instances where respiratory CO2 comprises the bulk of the total acidification signal, even in cells generally believed to primarily use glycolysis6. Additionally, the respiratory CO2 contribution to total acidification varies widely during the course of common metabolic profiling experiments, demonstrating that correct comparison of the glycolytic rate during different parts of an experiment requires correction for CO2.
To measure the glycolytic rate of cells using the rate of extracellular acidification, it is necessary to convert pH changes to changes in total H+ generated, and to subtract the extracellular acidification caused by CO2 released during operation of the citric acid cycle. Here, we describe a straightforward method for measuring extracellular proton production rate (from extracellular changes in pH and the calibrated buffering power of the assay medium) and CO2 production (from extracellular changes in O2 concentration), and demonstrate how to calculate glycolytic rate using these measurements.
This method strengthens the utility of extracellular acidification measurement by using it to properly calculate glycolytic rate as defined by lactate production. Without correction for respiratory CO2 (or direct measurement of lactate), it is impossible to determine if and to what extent the total acidification rate reflects glycolytic rate, confounding the interpretation of experiments that use total extracellular acidification as a direct measurement of lactate production.
CALCULATIONS
CO2 and lactate are, within experimental error, the only two contributors to extracellular acid production, based on experiments with myoblast cells6. Therefore, the rate of total extracellular acidification (PPR, proton production rate) can be defined as:
PPRtot = PPRresp + PPRglyc Equation 1
where tot = total; resp = respiratory; glyc = glycolytic. Glycolytic PPR is thus:
PPRglyc = PPRtot - PPRresp Equation 2
Here,
PPRtot = ECARtot/BP Equation 3
where ECAR = extracellular acidification rate (mpH/min), and BP = buffering power (mpH/pmol H+ in 7 µl), while
PPRresp = (10pH-pK1/(1+10pH-pK1))(max H+/O2)(OCRtot – OCRrot/myx) Equation 4
where K1 = combined equilibrium constant of CO2 hydration and dissociation to HCO3- + H+; max H+/O2 = the CO2-derived acidification for a particular metabolic transformation such as complete oxidation of glucose6; OCR = oxygen consumption rate (pmol O2/min), and OCRrot/myx = non-mitochondrial OCR.
Equation 4 isolates mitochondrial OCR by subtracting any non-mitochondrial OCR (defined as OCR that is resistant to the mitochondrial respiratory poisons rotenone and myxothiazol) and accounts for the maximum H+ generated per O2 consumed for each substrate (max H+/O2) (see 6), as well as the proportion of CO2 giving rise to H+ at the experimental temperature and pH (10pH-pK1/(1+10pH-pK1). For full oxidation of glucose, mitochondrial Oxygen Consumption Rate (OCR) is exactly equal to the rate of CO2 production. In the confined assay volume of extracellular flux measurement, CO2 produced by respiration remains trapped in the assay medium. Most of the trapped CO2 is hydrated to H2CO3, which then dissociates to HCO3- + H+. A small fraction remains dissolved but not hydrated, and another small fraction is hydrated but not dissociated, as dictated thermodynamically by the combined equilibrium constant of CO2 hydration and dissociation to HCO3- + H+ at experimental temperature (37 °C) and pH (~7.4).
Thus, the complete equation for calculating PPRg by subtracting PPRresp from PPRtot is:
PPRglyc = ECARtot/BP – (10pH-pK1/(1+10pH-pK1))(max H+/O2)(OCRtot – OCRrot/myx) Equation 5
In this way, rates of respiration and glycolysis, as well as their associated ATP production rates, can be quantitatively determined from straightforward measurements (oxygen consumption, extracellular acidification, buffering capacity) and import or calculation of other required values (H+/O2, P/O, and the equilibrium constant K1) 6. The experiment described here expands on standard techniques for using the Extracellular Flux Analyzer such as Seahorse XF24 10,11; for other extracellular flux measurement formats (e.g., XFe96, or XFp), all volumes below should be scaled appropriately.
The buffering power of the assay medium can be measured by construction of a standard curve either directly in the extracellular flux platform or separately using a calibrated pH probe. Here, three options for measuring buffering by the extracellular flux assay medium are given, including using all injection ports of the extracellular flux analyzer with cell-free sample wells, or using only the last injection port in cell-containing wells (section 1) or by using an external pH measurement (section 2). See the attached spreadsheet for the full calculations of example data.
To measure buffering power using the pH-detecting capability of the extracellular flux instrument, it is safest to use cell-free wells to minimize signal variation. However, within the error, no statistical difference exists between cell-free and cell-containing wells when performing this measurement (data not shown). NOTE: The variation described in step 1.7 carries the advantage of accounting for any potential changes to buffering conferred by added compounds or by the presence of cells, with the disadvantage of noisier signal. However, as stated above, no significant differences were found in the calculated buffering power between the cell-free design shown in Table 1 and the post-experiment design in Table 2 under the experimental conditions described here.
Additionally, over small ΔpH ranges (<0.4 units; experimentally best restricted to 0.2 units), the linear slope obtained by plotting Δ mpH/pmol H+ adequately approximates the logarithmic relationship between ΔpH and [H+]. The slope of this standard curve therefore represents the buffering power of the assay medium under test in pH/nmol H+ in 7 µl, or mpH/pmol H+ in 7 µl. We recommend increasing medium buffering power or decreasing cell density for samples that exceed a 0.2 pH unit change during the measurement time. The measurement time may also be decreased, but this may shorten the steady state acidification rate and introduce error into the rate calculation.