Identification Of Erythromyeloid Progenitors And Their Progeny In The Mouse Embryo By Flow Cytometry

Summary

While infiltrating macrophages are continuously recruited to adult tissues from circulating precursors, resident macrophages seed their tissue during development, where they are maintained without further input from progenitors. The progenitors for resident macrophages were recently identified. Here, we present methods for the genetic fate mapping of the resident macrophage progenitors.

Abstract

Macrophages are professional phagocytes from the innate arm of the immune system. In steady-state, sessile macrophages are found in adult tissues where they act as front line sentinels of infection and tissue damage. While other immune cells are continuously renewed from hematopoietic stem and progenitor cells (HSPC) located in the bone marrow, a lineage of macrophages, known as resident macrophages, have been shown to be self-maintained in tissues without input from bone marrow HSPCs. This lineage is exemplified by microglia in the brain, Kupffer cells in the liver and Langerhans cells in the epidermis among others. The intestinal and colon lamina propria are the only adult tissues devoid of HSPC-independent resident macrophages. Recent investigations have identified that resident macrophages originate from the extra-embryonic yolk sac hematopoiesis from progenitor(s) distinct from fetal hematopoietic stem cells (HSC). Among yolk sac definitive hematopoiesis, erythromyeloid progenitors (EMP) give rise both to erythroid and myeloid cells, in particular resident macrophages. EMP are only generated within the yolk sac between E8.5 and E10.5 days of development and they migrate to the fetal liver as early as circulation is connected, where they expand and differentiate until at least E16.5. Their progeny includes erythrocytes, macrophages, neutrophils and mast cells but only EMP-derived macrophages persist until adulthood in tissues. The transient nature of EMP emergence and the temporal overlap with HSC generation renders the analysis of these progenitors difficult. We have established a tamoxifen-inducible fate mapping protocol based on expression of the macrophage cytokine receptor Csf1r promoter to characterize EMP and EMP-derived cells in vivo by flow cytometry.

Introduction

There are several successive but overlapping waves of hematopoietic progenitors during development whose myeloid progeny remain into adulthood. First, unipotent "primitive" progenitors emerge in the mouse yolk sac ^1,2 between E7.5-E8.25 and give rise to embryonic macrophages without any monocytic intermediate. Whether macrophages derived from primitive progenitors persist in the adult brain as microglia remains a subject of active investigation. Second, Erythro-Myeloid Precursors (EMPs) arise in the yolk sac at E8.5, enter the bloodstream and colonize the embryo. EMPs emerge from the yolk sac hemogenic endothelium in a Runx1-dependant endothelial-to-hematopoietic transition ^3,4. While EMP can differentiate into macrophages within the yolk sac, they also colonize the fetal liver from embryonic day (E)9⁵ and differentiate into erythrocytes, megakaryocytes, macrophages, monocytes granulocytes and mast cells ⁶. The macrophages that derive from EMPs exhibit proliferative capacity in developmental and adult tissues. Whether EMP-derived macrophages bypass the monocyte stage of differentiation is still controversial as very little is known about their differentiation pathway ^7,8. Finally, Hematopoietic Stem Cells (HSCs) emerge at E10.5 within the embryo proper from the aorta-gonad-mesonephros region and migrate to the fetal liver. HSCs with long-term repopulation capacity are only detected after E11 (at the 42 somite pair stage)⁹. There, they expand and differentiate from E12.5 until definitive hematopoiesis begins to shift to the bone marrow, which becomes the predominant site of blood cell production for the duration of postnatal life ¹⁰.

The spatial and temporal overlap in emergence, as well as shared immuno-phenotypic markers has thus far hampered our ability to distinguish the specific contributions of these waves of embryonic hematopoietic progenitors. While both EMP and HSC are generated in a Runx1-dependent manner and express the transcription factor Myb and the growth factor receptor Csf1r (Colony-Stimulating Factor 1 Receptor, also known as Macrophage Colony Stimulating Factor Receptor) among others, EMPs can be distinguished from HSCs by their lack of lymphoid potential, both in vitro and in vivo, their lack of long-term repopulating potential and lack of surface expression of the lineage marker Sca-1 ¹¹. Genetic fate mapping models are required to characterize macrophage ontogeny since they allow targeting embryonic progenitors in a cell-specific and time-specific manner. Here we present the fate-mapping protocol used in our laboratory to discriminate between the two lineages of macrophages found in most adult tissues: HSC-derived infiltrating macrophages and HSC-independent resident macrophages.

Tissue resident macrophages have been traced back to Myb-independent precursor cells expressing the cytokine receptor Csf1r¹² and are present in the embryo at E8.5-E10.5 using three complementary fate-mapping strategies ⁶. In order to study yolk sac hematopoiesis without labeling fetal HSCs, we use a transgenic strain, Csf1r^MeriCreMer, expressing a tamoxifen-inducible fusion protein of 'improved' Cre recombinase and two mouse estrogen receptors (Mer-iCre-Mer) under the control of the Csf1r promoter. Hence, the Cre recombinase will be active in Csf1r-expressing cells during a limited time-window. When used with a reporter strain containing a fluorescent protein downstream of a lox-STOP-lox cassette (Rosa26^LSL-eYFP), it will lead to the permanent genetic labeling of the cells present at the time of induction but also of their progeny. Administration at E8.5 of the active form of tamoxifen, 4-hydroxytamoxifen (OH-TAM), labels EMPs and macrophages, without labeling yolk sac unipotent "primitive" progenitors or fetal HSCs. Thereby, we have characterized the immunophenotype of EMPs and their progeny during embryonic development, as well as assessed the contribution of yolk sac-derived macrophages to the adult macrophage pools. Further work is required to characterize whether primitive progenitor-derived macrophages are also labeled using this approach and whether they can contribute to adult macrophage pools.

Protocol

Animal procedures were performed in accordance with the approved institutional animal care and use committee of the Institut Pasteur (CETEA).

1. In Utero Pulse Labeling in Csf1r ^MeriCreMer Rosa ^LSL-YFP Embryos

1. Prepare the stock solution of 4-hydroxytamoxifen (OH-TAM, 50 mg/mL).
   1. Under the fumehood, open the 25 mg vial of OH-TAM and add 250 µL ethanol (100%).
   2. Transfer the OH-TAM solution to a 2 mL microcentrifuge tube with a truncated tip and vortex at maximum speed for 10 min.
   3. Sonicate 30 min in a sonicator bath.
   4. Add 250 µL of PEG-35 castor oil under the fumehood to obtain a 50 mg/mL stock solution.
      NOTE: PEG-35 castor oil is a solvent with amphiphilic properties that binds hydrophobic molecules and solubilizes them in aqueous solvents.
   5. Vortex for approximately 5 min at maximum speed and sonicate 30 min in a sonicator bath.
   6. Aliquot 90 µL (4.5 mg) per microcentrifuge tube (1 aliquot per injection).
   7. Store at 4 °C for 1 week or at -20 °C for long term as previously described ¹³.
2. Prepare the stock solution of Progesterone (10 mg/mL)
   1. Add 250 µL of 100% Ethanol to 25 mg of progesterone to prepare a 10 mg/100 µL suspension under the fumehood. Vortex gently.
   2. Add 2250 µL autoclaved sunflower oil to make 10 mg/ml progesterone solution under the hood.
   3. Vortex for approximately 5 min at maximum speed, aliquot and store at 4 °C. Note that the solution is clear when stored.
3. Tamoxifen administration
   NOTE: Embryonic development was estimated considering the day of vaginal plug formation as Embryonic day (E) 0.5. Recombination is induced by single injection at E8.5 into pregnant Csf1r^MeriCreMerfemales ¹². Supplement OH-TAM with 37.5 µg per g of Progesterone to reduce abortion rates after tamoxifen administration. Inject at 1 pm (for vaginal plug observed in the morning).
   1. On the morning of injection, sonicate an aliquot of the OH-TAM solution for 10 min (or until completely resuspended).
   2. Add 360 µL NaCl 0.9% under the fumehood to obtain a 10 mg/mL OH-TAM solution and vortex thoroughly. Sonicate until the solution is clear and completely resuspended (at least 30 min).
   3. Pre-warm progesterone to room temperature.
   4. Mix 450 µL of OH-TAM and 225 µL of progesterone in a microcentrifuge tube. Vortex.
   5. Sonicate at least 10 min and load on to a 1 mL syringe with a 25G needle.
   6. In the animal facility, weigh the pregnant female (Csf1r^MeriCreMer females are in an inbred FVB genetic background and typical weigh between 25 and 33 g).
   7. Perform an intra-peritoneal injection by slowly injecting the calculated volume into the mouse. After withdrawing the needle, gently press on the puncture wound and massage the abdomen to distribute the OH-TAM.
      NOTE: The OH-TAM injection dose is 75 mg/kg and the Progesterone dose is 37.5 mg/kg. Table 1 provides the volume to inject into pregnant females.

Mouse weight (g)	Total volume to inject from the mix (µL)
25	281
26	292
27	303
28	315
29	326
30	338
31	348
32	360
33	371
34	382
35	394

Table 1: Injection volume of 4-OH-tamoxifen (OH-TAM). Volume required for a single injection at E8.5 of 75 µg per g (body weight) of OH-TAM supplemented with 37.5 µg per g of progesterone.

2. Dissection of the Yolk Sac (YS) and Fetal Liver (FL)

NOTE: Rigorous sterile techniques are not necessary when manipulating embryos unless if they are going to be used for long-term culture. Nevertheless, the working area must be clean and covered in foil under absorbent paper.

1. Prepare ice-cold phosphate buffered saline (PBS) and digestion mix (PBS containing 1 mg/mL collagenase D, 100 U/mL Deoxyribonuclease I (DNase I) and 3% fetal bovine serum).
2. Sacrifice pregnant females by cervical dislocation at the required gestation day (e.g. embryonic stage E10.5).
3. Pinch the skin just over the genitals and make a small incision at the midline with scissors. Pull the skin toward the head to expose completely the body wall without fur. Cut the abdominal muscles to expose the internal organs and push the gut to expose the two uterine horns.
4. With middle-sized blunt forceps, grab the fat-pad attached to the ovary and gently pull the uterus. Cut at the cervical level of the uterine horns and lift the horns from the peritoneal cavity. Remove the fat-pad to completely free the uterine horns and cut the horns from the ovary on each side.
5. Put the horns into ice-cold PBS in a 10 mm Petri dish. Rapidly grip the uterus muscle layers at one extremity (cervical end) and slide fine scissors between the muscle layer and the decidual tissue to release the embryos with the surrounding decidual tissue.
   NOTE: Muscle tend to rapidly contract after the extraction, so this step must be as quick as possible.
6. Use one pair of fine forceps to cut off the Reichert's membrane and the placenta.
7. Gently remove the yolk sac and place it in a 24-well tissue culture plate with 0.5 mL of digestion mix.
   NOTE: At this step, embryonic blood can be collected.
   1. Immediately after severing the umbilical and vitelline vessels, transfer the embryo into a 12-well tissue culture plate containing 10 mM ice-cold ethylenediaminetetraacetic acid (EDTA). Decapitate the embryo using sharp fine scissors, trying to limit as much as possible tissue dilaceration. Incubate on ice for 10-15 min and collect the EDTA containing the blood.
8. Remove the amnion surrounding the embryo.
9. For stages <E11.5, count the number of somite pairs for better staging of embryos and a better time resolution (each somite pair develops in ~1 h 30 min).
10. Cut the head of the embryo using forceps or fine scissors. Transfer the head to a 24-well plate with 0.5 mL digestion mix.
    NOTE: The neuroectoderm and brain at later stages are further dissected for flow cytometry analysis; carefully remove the surrounding vascular plexus.
11. Cut the embryo above the hindlimb and remove the forelimbs.
12. To isolate the liver, open the thorax using a pair of fine forceps. Pinch anteriorly to the heart and gently pull while using the second forceps to free the organs from the body.
    1. Carefully separate the fetal liver from the heart and gut. Transfer the fetal liver to a 24-well plate with 0.5 mL digestion mix. Carefully monitor the transfer under the dissecting microscope.
13. Collect the tail region (or any other embryo part) for genotyping by polymerase chain reaction assay (PCR).
    NOTE: Other tissues and organs can be harvested from E10.5 embryos for a similar analysis using flow cytometry. Blood, head skin, aorta-gonad-mesonephros region (AGM), heart and neuroectoderm can be collected at E10.5. At later stages, lung, kidney, spleen and pancreas can also be collected. A detailed description of the dissection of the AGM at different developmental stages has been previously described ¹⁴.

3. Processing of Embryonic Tissues for Flow Cytometry

1. Incubate the organs (placed in the digestion mix) for 30 min at 37 °C.
2. Transfer the tissue and enzymatic solution onto a 100 μm strainer placed in a 6-well tissue culture plate filled with 6 ml of FACS buffer (0.5% Bovine Serum Albumin (BSA) and 2 mM EDTA in 1x PBS). Mechanically dissociate by gently mashing with the black rubber piston of a 2 mL syringe to obtain a single-cell suspension.
   NOTE: From now on, all steps should be performed at 4 °C.
3. Collect the cell suspension with a Pasteur pipette and transfer into a 15 mL tube.
4. Spin for 7 min at 320 x g at 4 °C. Discard the supernatant by aspiration.
5. Resuspend the pellet in 60 µL Fc-blocking buffer (CD16/CD32 blocking antibody diluted 1/50 in FACS buffer).
   1. Transfer 50 µL of the single-cell suspension per well in a round bottom 96 multi-well plate. Incubate for at least 15 min on ice.
      NOTE: The staining can also be performed in 5 mL polystyrene FACS tubes when handling a small number of samples.
   2. Transfer the remaining 10 µL into a 5 mL polystyrene FACS tube to obtain a pool of the samples from each tissue. This pool will serve as the controls (i.e. unstained samples and fluorescent minus one (FMO) controls for each fluorochrome). Transfer 50 µL of the pool for each fluorescent minus one (FMO) control (one per fluorochrome) to the 96 multi-well plate.
      NOTE: Each FMO control contains all the fluorochrome-coupled antibodies from the antibody panel, except for the one that is being measured. FMOs are used to identify gate boundaries and to control for the spectral overlap in multicolor panels. To correctly address the variations in background and autofluorescence between different tissues, it is important to prepare these controls from the pool of samples of each tissue. The appropriate control for YFP expression will be the samples from Cre-negative embryos, which are confirmed by PCR genotyping.

4. Surface Antigen Staining

1. Prepare the antibody mix in FACS buffer (Table 2). Prepare 50 µL of antibody mix per sample.
   1. Use the following fluorochrome-coupled antibodies: anti-CD45.2 (clone 104); anti-CD11b (clone M1/70); anti-F4/80 (clone BM8); anti-AA4.1 (clone AA4.1); anti-Kit (clone 2B8); and anti-Ter119 (clone Ter119).
   2. Prepare six antibody mixes for the FMO controls in FACS buffer. Prepare 50 µL of antibody mix per control sample.
      NOTE: The antibody dilution in the antibody mix is two times more concentrated than the final concentration indicated in the materials table. For a panel with six fluorochrome-coupled antibodies, 6 FMO controls are prepared. Table 2 provides the composition of the antibody mix and FMO controls for one tube.

		Volume (µL) of antibody  (Final Volume 50 µL)
Antibody	Clone	Antibody Mix	FMO CD45.2	FMO CD11b	FMO F4/80	FMO AA4.1	FMO      Kit	FMO Ter119
anti-CD45.2	104	1	0	1	1	1	1	1
anti-CD11b	M1/70	0.5	0.5	0	0.5	0.5	0.5	0.5
anti-F4/80	BM8	1	1	1	0	1	1	1
anti-AA4.1	AA4.1	1	1	1	1	0	1	1
anti-Kit	2B8	0.5	0.5	0.5	0.5	0.5	0	0.5
anti-Ter119	Ter119	0.5	0.5	0.5	0.5	0.5	0.5	0
FACS buffer		45.5	46.5	46	46.5	46.5	46	46

Table 2: Volume of antibodies using for staining and Fluorescent minus one (FMO) controls. Volume (µL) of antibody required for a final volume of 50 µL.

2. Add 50 µL of the antibody mix to the samples in the 96-multiwell plate (final volume during staining is 100 µL). Gently pipette up and down twice and incubate on ice for 30 min.
3. Spin the 96-multiwell plate for 7 min at 320 x g at 4 °C and discard the supernatant. Resuspend in 200 µL of FACS buffer.
4. Repeat wash procedure (step 4.3) twice with 150 µL FACS buffer.
5. Filter the samples and the controls (FMOs and unstained pool samples) into 5 ml polystyrene tubes through a 70 μm strainer. Store on ice until acquisition.

5. Identification of EMPs and YS-derived Macrophages by Flow Cytometry

NOTE: This protocol was optimized using a 4 laser flow cytometer equipped with a 405 nm Violet laser, a 488 nm Blue laser, a 562 nm Yellow laser and a 638 nm Red laser.

1. Prepare compensation beads for each coupled antibody following the manufacturer's instructions. Use unstained samples and compensation beads to optimize laser intensities.
2. To identify gate boundaries, use FMO (Fluorescence minus one) controls for each antibody.
3. In order to exclude dead cells, add 1 µL of DAPI (1 mg/ml) to the tube (containing 200 µL of stained cell suspension) 1 min before acquisition. Use the strong DAPI signal and the forward-scattered parameter (FSC) to perform exclusion of dead cells and debris.
   NOTE: Use software from the flow cytometer to draw gates during acquisition. Compensation matrix and analysis can be performed after sample acquisition using other commercially available software.
4. Use forward and side scatter (FSC vs SSC) to perform live cell and doublet discrimination from total events.
5. Create fluorescence dot plots in log-scale axis and draw daughter gates to, first, exclude erythrocytes (Ter119⁺) and, then, to identify progenitor cells (Kit⁺) and hematopoietic cells (CD45⁺ Kit^neg) (See Figure 1).
6. Create fluorescence histograms to quantify the labeling efficiency of YFP among the different identified populations in the YS (Figure 2), fetal liver (Figure 3) and brain (Figure 4).

Results

Genetic fate mapping was achieved by administration at E8.5 of OH-TAM into Csf1r-Mer-iCre-Mer females mated with males carrying a Rosa26-LSL-eYFP reporter. In the presence of OH-TAM, excision of the stop cassette leads to the permanent expression of YFP in the cells expressing Csf1r. We collected two hematopoietic tissues: the yolk sac and the fetal liver and a non-hematopoietic tissue, the neuroectoderm, from the embryos at E10.5. Single-cell suspensions were obtained by enzymat...

Discussion

The different waves of hematopoietic precursor cells partially overlap within a short time frame, which makes the analysis of the contribution of each wave of developmental hematopoiesis to immune cells technically very challenging.

Tamoxifen-inducible Cre systems offer the opportunity to tag specific cells in a temporally inducible manner and to perform lineage analysis in embryos or adults, without the need for ex vivo or in vitro culture or transplantation. In tamoxifen-in...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
#5 Straight Forceps	Fine Science Tools	11251-20
MC19/B Pascheff-Wolff Spring Scissors	Fine Science Tools	15371-92
8.5 cm straight scissors	Fine Science Tools	14090-09
Anti-Mouse Kit-PE (clone 2B8)	BD Pharmingen	553355	1/200 dilution in FACs Buffer
Anti-Mouse CD45.2 APC-Cy7 (clone 104)	Sony	1149120	1/100 dilution in FACs Buffer
Anti-Mouse AA4.1-APC (CD93, clone AA4.1)	eBioscience	17-5892	1/100 dilution in FACs Buffer
Anti-Mouse Ter119 PerCP-Cy5.5 (clone Ter119)	Biolegend	560512	1/200 dilution in FACs Buffer
Anti-Mouse F4/80-BV421 (clone BM8)	BD Pharmingen	123137	1/100 dilution in FACs Buffer
Anti-Mouse CD11b PE-Cy7 (clone M1/70)	BD Pharmingen	552850	1/200 dilution in FACs Buffer
Anti-Mouse CD16/CD32 (Mouse BD Fc Block, clone 2.4G2)	BD Biosciences	553142
PBS 1x	Fischer Scientific	12559069
Fetal Bovine Serum	Fischer Scientific	11570506
Collagenase D	Roche	11088882001
Deoxyribonuclease I	Sigma	D4527-20KU
6-well tissue culture plate	Dutscher Dominique	353046
12-well tissue culture plate	Dutscher Dominique	353224
24-well tissue culture plate	Fischer Scientific	11874235
96 wells U-shape bottom tissue culture plate	Dutscher Dominique	353227
Syringe Plastipak 2 mL	Dutscher Dominique	300185
Nylon grid 100 µm cell strainers	Dutscher Dominique	352360
Nylon grid 70 µm cell strainers	Dutscher Dominique	352350
15 ml Falcon tubes	Dutscher Dominique	352096
Stericup GP Millipore filtration kit, 0.2 μm	Dutscher Dominique	51246
Bovine Serum Albumin	Sigma	A7906-500G
(Z)-4-HYDROXYTAMOXIFEN 25mg	Sigma	H7904-25MG	Special care should be taken when preparing and working with tamoxifen and its derivates. Always use appropriate personal protective equipment
Progesterone	Sigma	P3972	Always use appropriate personal protective equipment
PEG-35 castor oil (Kolliphor/Cremophor EL)	Sigma	C5135
Sunflower oil	Sigma	S5007-250ML
Ethanol	Sigma	24103-1L-R-D	Always use appropriate personal protective equipment and use under the fumehood
EDTA	Sigma	E9884-500G
DAPI, 1 ML (1 MG/ML IN WATER)	Fischer Scientific	10116287
CytoFLEX S B2-R3-V4-Y4 flow cytometer	Beckman Coulter	B75408
CytoFLEX Daily QC Fluorospheres	Beckman Coulter	B53230
VersaComp Antibody Capture Bead kit (2x5 mL)	Beckman Coulter	B22804
FVB-Tg(Csf1r-cre/Esr1*)1Jwp/J	The Jackson laboratory	19098
B6.129X1-Gt(ROSA)26Sortm1(EYFP)Cos/J	The Jackson laboratory	6148