Visualizing Impairment of the Endothelial and Glial Barriers of the Neurovascular Unit during Experimental Autoimmune Encephalomyelitis In Vivo

Summary

Here, we present protocols to investigate impairment of the neurovascular unit during experimental autoimmune encephalomyelitis in vivo. We specifically address how to determine blood-brain barrier permeability and gelatinase activity involved in leukocyte migration across the glia limitans. 

Abstract

The neurovascular unit (NVU) is composed of microvascular endothelial cells forming the blood-brain barrier (BBB), an endothelial basement membrane with embedded pericytes, and the glia limitans composed by the parenchymal basement membrane and astrocytic end-feed embracing the abluminal aspect of central nervous system (CNS) microvessels. In addition to maintaining CNS homeostasis the NVU controls immune cell trafficking into the CNS. During immunosurveillance of the CNS low numbers of activated lymphocytes can cross the endothelial barrier without causing BBB dysfunction or clinical disease. In contrast, during neuroinflammation such as in multiple sclerosis or its animal model experimental autoimmune encephalomyelitis (EAE) a large number of immune cells can cross the BBB and subsequently the glia limitans eventually reaching the CNS parenchyma leading to clinical disease. Immune cell migration into the CNS parenchyma is thus a two-step process that involves a sequential migration across the endothelial and glial barrier of the NVU employing distinct molecular mechanisms. If following their passage across the endothelial barrier, T cells encounter their cognate antigen on perivascular antigen-presenting cells their local reactivation will initiate subsequent mechanisms leading to the focal activation of gelatinases, which will enable the T cells to cross the glial barrier and enter the CNS parenchyma. Thus, assessing both, BBB permeability and MMP activity in spatial correlation to immune cell accumulation in the CNS during EAE allows to specify loss of integrity of the endothelial and glial barriers of the NVU. We here show how to induce EAE in C57BL/6 mice by active immunization and how to subsequently analyze BBB permeability in vivo using a combination of exogenous fluorescent tracers. We further show, how to visualize and localize gelatinase activity in EAE brains by in situ zymogaphy coupled to immunofluorescent stainings of BBB basement membranes and CD45+ invading immune cells.

Introduction

The central nervous system (CNS) coordinates all body and mental functions in vertebrates, and CNS homeostasis is essential for a proper communication of neurons. CNS homeostasis is warranted by the neurovascular unit (NVU), which protects the CNS from the changing milieu of the blood stream. The NVU is composed of CNS microvascular endothelial cells, which are biochemically unique and establish the blood-brain barrier (BBB) in continuous crosstalk with pericytes, astrocytes, neurons, and extracellular matrix (ECM) components, establishing two distinct basement membranes¹. The endothelial basement membrane that ensheathes the abluminal aspect of the BBB endothelial cells harbors a high number of pericytes and is composed of laminin α4 and laminin α5, in addition to other ECM proteins². In contrast, the parenchymal basement membrane consists of laminin α1 and laminin α2 and is embraced by astrocytic end-feet. The parenchymal basement membrane together with the astrocyte end-feet composes the glia limitans that segregates the CNS neuronal network from the cerebrospinal fluid filled perivascular or subarachnoid spaces³. Due to the unique architecture of the NVU, immune cell trafficking into the CNS is distinct from that into peripheral tissues as it requires a two-step process with the immune cells, first breaching the endothelial BBB and subsequently the glia limitans in order to reach the CNS parenchyma. 

Multiple sclerosis (MS) is a common neuroinflammatory disease of the CNS, in which a large number of circulating immune cells enter the CNS and cause neuroinflammation, demyelination, and focal loss of BBB integrity⁴. Loss of BBB integrity is an early hallmark of MS, as indicated by the presence of gadolinium contrast enhancing lesions in the CNS as visualized by magnetic resonance imaging (MRI)⁵. Leukocyte extravasation into the CNS occurs at the level of postcapillary venules; however, the precise mechanisms involved in immune cell diapedesis across the BBB basement membrane and subsequently the glial barrier remain to be explored. Experimental autoimmune encephalomyelitis (EAE) serves as an animal model for MS and has significantly contributed to our current knowledge about MS pathogenesis. For instance, using the EAE model it has been discovered that leukocyte extravasation occurs in a multistep process, including an initial capture and rolling step mediated by selectins and mucin-like molecules such as P-selectin glycoprotein ligand (PSGL)-1, followed by integrin-dependent firm arrest and crawling of T cells on BBB endothelial cells to permissive sides for diapedesis⁶. 

Once T cells have crossed the endothelial BBB and the endothelial basement membrane, they need to encounter their cognate antigen on macrophages or dendritic cells strategically localized in the leptomeningeal or perivascular spaces. This interaction induces focal production of pro-inflammatory mediators that trigger the subsequent mechanisms required for CNS tissue invasion of immune cells via the glia limitans^7,8,9. Focal activation of matrix-metalloproteinases (MMP) -2 and MMP-9 alters chemokine activation and induces degradation of extracellular matrix receptors on astrocyte end-feet, which is a prerequisite for immune cell migration across the glia limitans into the CNS parenchyma and to induce the onset of clinical symptoms of EAE^10,11. 

Combining detection of CNS infiltrating immune cell with BBB leakage and gelatinase activity in CNS tissue sections provides valuable information about the functional integrity of the endothelial and glial barrier in the context of neuroinflammation. For instance, we recently investigated the constitutive loss of the endothelial tight junction molecule junctional adhesion molecule (JAM)-B in immune cell trafficking into the CNS in the context of EAE. Compared to healthy wild-type C57BL/6 mice, healthy JAM-B-deficient littermates showed no impairment of BBB integrity as shown by in vivo permeability assessment using endogenous as well as exogenous tracers¹². In the context of EAE, JAM-B-deficient C57BL/6 mice showed ameliorated disease symptoms, which was associated with inflammatory cell trapping in the leptomeningeal and perivascular spaces¹². To examine this phenomenon we applied in situ zymography, allowing identification of gelatinase activity in order to test if lack of gelatinase activity in JAM-B-deficient mice may be responsible for the reduced numbers of immune cells able to breach the glia limitans¹².  

Given the availability of different genetically modified mouse models lacking, e.g., different BBB tight junction molecules that might cause changes in BBB function, methodologies for investigating BBB integrity are important. In addition, newly developed drugs could impact on NVU barriers. Here we show how to induce EAE in C57BL/6 mice by active immunization with the myelin oligodendrocyte glycoprotein (MOG)-peptide aa35-55 in complete Freund’s adjuvants. We then explain how to localize immune cell infiltration across the endothelial and glial barriers of the NVU and how to study in vivo endothelial and glial barrier integrity by in situ detection of exogenous tracers and gelatinase activity, respectively.  

Protocol

All studies were conducted under the guidelines according to the Swiss legislation on the protection of animals and were approved by the Veterinary Office of the Canton of Bern, Switzerland (permission numbers: BE 31/17 and BE 77/18).

1. Housing of C57BL/6 mice in specific pathogen free (SPF) conditions

1. House mice in individual ventilated cages with a 12/12 h light-dark cycle. Provide food and water ad libidum. To supervise microbiological quality of the mice, the experimental cohort underwent quarterly health monitoring by dirty bedding sentinels following FELASA recommendations¹³.
2. Use ear punches to individually mark 8-12 week old female C57BL/6 mice.

2. Immunization of C57BL/6 mice

1. Preparation of solutions¹⁴:
   1. For Complete Freund’s Adjuvant (CFA), mix 30 mL of Incomplete Freund’s Adjuvant with 120 mg of freshly pestled heat inactivated Mycobacterium tuberculosis (H37RA) under a fume hood. Store stock solution at 4 °C.
   2. For the MOGaa35-55-peptide stock solution, dissolve MOGaa35-55-peptide in sterile PBS (4 mg/mL) and store at -80 °C.
   3. Prepare the MOG-emulsion: 
      1. Dilute CFA 1:2 with MOG-peptide stock solution in a 2 mL microtube. 
      2. Seal the microtube with sealing film and fix on a Vortex mixer by completely covering the tube with adhesive tape. Vortex emulsion for 4 h at 4 °C.
   4. Prepare syringes with stabile emulsion: 
      1. Take the microtube and quickly spin down the emulsion using a small table centrifuge. Collect emulsion into a syringe using a 18G x 1½’’ (1.2 mm x 40 mm) injection needle. 
      2. According to the number of mice adjust the emulsion volume in the syringe (100 µL/mouse) and replace the 18G needle with a 27G x ¾’’ (0.4 mm x 19 mm) injection needle. Seal the injection needle attached to the syringe with sealing film. 
   5. For the pertussis toxin (PTx) stock solution, dissolve 50 µg of lyophilized PTx in 500 µL of sterile PBS (100 ng/µL). Store stock solution at 4 °C.
   6. For the PTx working solution, mix 97 µL of sterile PBS with 3 µL of PTx stock solution (300 ng/100 µL) per mouse (for intraperitoneal injection use a 30G x ½’’ (0.3 mm x 13 mm) needle).
2. EAE induction
   1. Anesthetize C57BL/6 mice with isofluorane using a vaporizer system. To induce anesthesia in mice, expose the mouse to 4.5% isofluorane in oxygen in a small incubation chamber before transferring the mouse to a facemask with 2.1% isofluorane. Use an anesthesia unit equipped with heating pad to prevent hypothermia of the mouse.
   2. Fix the anesthetized mouse in one hand and first inject 30 µL of MOG35-55/CFA-emulsion subcutaneously into hind leg flanks (Figure 1: 1 + 2; in total 60 µL; left flank 30 µL and right flank 30 µL) in close proximity to the inguinal lymph nodes.
   3. Place the mouse on its belly and inject 20 µL of MOGaa35-55/CFA-emulsion into the left and right soft fatty tissue at the tail root (Figure 1: 3 + 4; in total 40 µL; left side tail root 20 µL and right side tail root 20 µL) and a little droplet of MOGaa35-55/CFA-emulsion into the neck of the mouse (Figure 1: 5).
   4. Inject 100 µL of PTx solution intraperitoneally into the mouse. Hold the head of the mouse below the body center avoiding injection into the intestine. 
   5. Replace maintenance diet (extrudate major nutrients: crude protein 18.5%; crude fat 4.5%; crude fiber 4.5%; crude ash 6.5%; starch 35%; metabolic energy: 13.1 MJ/kg) to breeding diet (extrudate major nutrients: crude protein 23.5%; crude fat 5.5%; crude fiber 3%; crude ash 5.7%; starch 36%; metabolic energy: 14.3 MJ/kg) in order to provide the mice with food of higher energy content before and during the expected clinical disease. 
   6. Remove the face mask and transfer the mouse to its home cage with a warming pad. Make sure the mouse is fully awake and motile after 10 minutes. 
   7. Repeat the PTx injection (2.2.4) 48 h after the first treatment.

3. Scoring of EAE mice

1. Check the health status of EAE mice every morning by taking a look inside the cages.
2. Score EAE mice every afternoon.
3. Take every individual mouse included in the EAE experiment out of the cage and check whether the tail has tonus by moving it upward with a finger. A healthy mouse will keep its tail up (the tail has a tonus). If clinical EAE has started, the tail tonus will be lower, visible by a gradual drop of the tail. Eventually the mouse will not be able to lift its tail at all. 
4. Place every individual mouse included in the EAE experiment on the clean bench and observe and document the walking behavior. See Table 1¹⁵ for scoring criteria for the assessment of disease severity (the EAE score).
5. Assess and document the weight of every mouse included in the experiment.
6. To ensure adequate food and water uptake by mice displaying a clinical EAE score of 1 supply moistened food in a plastic dish on the bottom of the cage and refresh daily.

4. In vivo permeability assay

1. Preparations of solutions:
   1. For dextran stock solutions, dissolve 10 mg of 10 kDa Dextran Alexa Fluor 488 as well as 3 kDa Dextran Texas Red in 500 µL of 0.9% sodium chloride solution (20 mg/mL).
   2. For the dextran working solution, just before injection pipet 55 µL of 10 kDa Dextran Alexa Fluor 488 stock solution (20 mg/mL) onto a piece of sealing film and add 55 µL of 3 kDa dextran Texas Red stock solution (20 mg/mL). Mix and collect 100 µL into a disposable fine syringe (final concentration 2 mg/100 µL). 
   3. For the 10% formaldehyde (PFA) stock solution, combine 10 g of PFA extra pure powder, 100 mL of PBS, and 200 µL of 1N NaOH in a clean glass beaker and heat up to precisely 56 °C under stirring using a magnetic stirrer; keep at 56 °C for 30 min until the PFA is completely dissolved; cool down to room temperature; adjust pH to 7.4; and filter through a paper filter. Store at - 20 °C. The stock solution can be diluted further using PBS.
2. Shortly anesthetize healthy C57BL/6 mice or C57BL/6 mice suffering from EAE with isoflurane (the mouse will be sedated for approximately 1 min). Use an automated system as in step 2.2.1 (mice will be exposed to 4.5% isoflurane in oxygen in an induction chamber and then transferred to a facemask with 2.1% isoflurane).
3. Place the anesthetized mouse in lateral position on the table, then intravenously (e.g. retro-orbitally) inject 100 µL of fluorescent tracers into the mouse before the mouse wakes up.
4. Immediately remove the facemask and make sure the mouse is fully awake and motile after the short anesthesia. Let the tracer circulate for 15 min.
5. Proceed with step 5.1.

5. Perfusion of mice

1. For in vivo permeability assessment:
   1. Begin the procedure 15 min after fluorescent tracer injection by inducing deep isoflurane anesthesia. To induce deep anesthesia in mice use 2.3% of isoflurane in oxygen. Use the paw withdrawal reflex to judge the depth of the anesthesia (pinch the skin between the toes; a lack of flexion indicates a sufficient depth), and probe the reflexes of both the forelimb and the hindlimb in mice subjected to EAE. 
   2. Fix the mouse on its back and spray the belly with ethanol. Open the thorax using a scissor and remove the diaphragm. Open the right atrium of the beating heart using a scissor and perfuse the mouse through the left ventricle of the heart with 10 mL of PBS followed by 10 mL of 4% PFA in PBS. 
      CAUTION: To avoid inhaling PFA, perfuse the mouse in a fume hood.
   3. Proceed to section 6. 
2. For in situ zymography: 
   1. Induce deep isoflurane anesthesia using 2.3% isoflurane in oxygen in a mouse suffering from EAE, and check the depth of anesthesia as in step 5.1.1.
   2. Next, fix the mouse on its back and spray the belly with ethanol. Open the thorax using a scissor and remove the diaphragm. Open the right atrium of the beating heart using a scissor and perfuse the mouse through the left ventricle of the heart with 20 mL of PBS.
   3. Proceed to section 6.

6. Dissection and freezing of brains

1. Preparation of cooling bath:
   1. Fill a flat dewar container with crushed dry ice and add 2-methylbutane (Isopentane) until the liquid reaches about 1 cm above the dry ice pack. Cover with a loose lid – e.g., an ice bucket cover.
2. Clip off the head of the perfused mouse with sharp scissors and remove skin and ears using a smaller set of scissors.
3. Carefully dissect the skullcap by cutting from the foramen magnum towards the front at the left and the right side allowing to upfold the skullcap over the brain. Then, carefully lift out the intact brain from the base of the skull while severing the optical nerves using a flat metal spatula. 
4. Place brain on aluminum foil and cut the brain in three pieces (frontal brain, middle brain, and cerebellum + brain stem) by placing two coronal cuts.
5. Fill a cryomold (25 mm x 20 mm x 5 mm) to the first quarter with optimum temperature cutting (O.C.T.) matrix, place brain slices with the anterior side of each brain piece facing downwards into the cryomold, and cover tissue completely with O.C.T. matrix.
6. Place the cryomold with the tissue in a horizontal orientation into the 2-Methylbutane bath and make sure that the tissue freezes from the bottom to the top within 1 minute by avoiding dipping the entire tissue block into the bath.
7. Transfer frozen tissue to -80 °C for storage and proceed with section 7.

7. Preparation of frozen tissue sections

1. Equilibrate temperature from frozen tissue from -80 °C to -20 °C in the cryostat for 30 min.
2. Remove tissue block from the cryomold and mount on the cryostat tissue holder (set to -15 °C) using O.C.T. matrix.
3. Trim the edges of the tissue block on the holder of the cryostat with a sharp scalpel, and start cutting into the tissue block by removing 20 µm sections with the cryostat knife until the tissue is visible.
4. For the analysis of in vivo BBB permeability:
   1. Cut 6-10 µm tissue sections, collect them on adhesion glass slides, and immediately image the sections covered with a cover slip using a fluorescence microscope. 
   2. Assess appearance of blood vessels in the brain (pay attention to sharp borders of non-leaky blood vessels compared to diffuse fluorescence patterns observed for leaky blood vessels). As positive control, verify the leakage of the tracer into the stroma of the circumventricular organs or the choroid plexus which lack a BBB.
5. For in situ zymography:
   1. Cut 6 µm tissue sections using a cryostat, collect them on adhesion glass slides, and freeze tissue sections at -20 °C in a freezing box containing silica gel in the lid.

8. In situ zymography combined with laminin/CD45 immunofluorescence staining

1. Prepare solutions:
   1. Prepare embedding solution: 
      1. Mix 6 g of glycerol (analytical grade), 2.4 g of poly(vinyl alcohol), 6 mL of ddH2O, and 12 mL of 0.2 M Tris buffer, pH 8, and stir (magnetic stirrer) the solution for 4 h at RT. 
      2. Transfer the solution to a 50 mL centrifuge tube and let it rest for 2 h at RT. Subsequently incubate the solution for 10 min at 50 °C (water bath) and centrifuge for 20 min at 2,700 x g at room temperature. 
      3. Take the supernatant and freeze in aliquots at -20 °C. 
   2. Prepare cold gelatin solution: 
      1. Dissolve 0.1 g of cold gelatin from bovine skin in 10 mL of ddH2O.
      2. Let it soak for at least 1 day and store aliquots at 4 °C.
   3. Prepare ice-cold methanol (-20 °C): 
      1. Put 100% methanol in a coplin jar and cool down to -20 °C.
   4. Prepare 10% sodium azide stock solution: 
      1. Add 1 g of sodium azide to 10 mL of ddH2O and store at room temperature.
   5. Prepare 0.1% sodium azide working solution: 
      1. Mix 99 µL of ddH2O with 1 µL of 10% sodium azide stock solution.
   6. Dissolve 1 mg of fluorescein conjugated dye-quenched (DQ) gelatin from pig skin in 1 mL of sodium azide working solution and store 100 µL aliquots protected from light at 4 °C.
   7. Dissolve 30 mg of 1,10-phenanthroline monohydrate in 76 µL of ethanol and store at -20 °C.
   8. Prepare 25x protease inhibitor solution: 
      1. Add 1 tablet of EDTA free protease inhibitor to 2 mL of ddH2O. Store at -20 °C.
   9. Just before use, prepare reaction solution (150 µL/section): 
      1. Centrifuge the 1 mg/mL DQ gelatin solution for 5 min at 13,300 x g. 
      2. Mix 127.2 µL of ddH2O, 15 µL of 10x reaction buffer (Gelatinase/Collagenase Assay Kit; see Table of Materials), 0.3 µL of 20 mg/mL cold gelatin, 1.5 µL of 1 mg/mL DQ gelatin, and 6 µL of 25x protease inhibitor solution.
   10. Just before use, prepare phenantroline negative control reaction solution (150 µL/section): 
       1. Mix 125.2 µL of ddH2O, 15 µL of 10x reaction buffer, 0.3 µL of 20 mg/mL cold gelatin, 1.5 µL of 1 mg/mL DQ gelatin, 6 µL of 25x protease inhibitor EDTA free, and 2 µL of 2 M 1,10-phenantroline (MMP inhibitor).
   11. Just before use, prepare cold gelatin (non-fluorescent) negative control reaction solution (150 µL/section):
       1. Mix 128.7 µL of ddH2O, 15 µL of 10x reaction buffer, 0.3 µL of 20 mg/mL cold gelatin, and 6 µL of EDTA-free 25x protease inhibitor. 
   12. Prepare primary antibody cocktail for counterstaining, for example, 0.95 µg/mL polyclonal rabbit anti-laminin antibody and 10 µg/mL polyclonal rat anti-CD45 antibody in 1% BSA in PBS, and prepare appropriate isotype control primary antibody cocktails.
   13. Prepare secondary antibody solution, for example, 7.5 µg/mL Cy3 goat anti-rat + 15 µg/mL AMCA anti-rabbit in 1% BSA in PBS (protect from light).
2. Thaw 6 µm non-fixed brain tissue sections from EAE mice inside the plastic freezing box containing silica gel in the lid in a fume hood to avoid retention of water to the tissue and separate 2 tissue sections on one slide by drawing lines with a water repelling pen
3. Prepare reaction solutions (steps 8.1.9-8.1.11), centrifuge for 5 min at 13,400 x g at room temperature, and pre-warm to 37 °C using a water bath.
4. Rehydrate the tissue sections for 5 min at 37 °C using 1x reaction buffer. Then, pour off the 1x reaction buffer, add reaction solution on the tissue sections, and incubate for 4 h at 37 °C. Wash slides 5 times in ddH2O.
5. Fix sections for 5 min with ice-cold methanol at -20 °C and afterwards wash sections once with PBS at room temperature.
6. Add 1% BSA in PBS to the sections and incubate for 20 min at room temperature (protect from light). Then, discard 1% BSA in PBS from the sections by flipping the slides on tissue, add primary antibody cocktail, and incubate for 1 h at room temperature (protect from light).
7. Wash sections twice with PBS, add secondary antibody cocktail, and incubate for 1 h at room temperature (protect from light).
8. Wash sections twice with PBS, mount the slides with embedding solution, let mounted sections dry over night at room temperature (protect from light). Finally, analyze stained tissue sections using a fluorescent microscope.

Results

Assessment of the clinical course of EAE in C57BL/6 mice should result in a disease curve as depicted in Figure 2A and changes in the mouse body weight as presented in Figure 2B. C57BL/6 mice immunized with MOGaa35-55 usually start to develop disease symptoms around day 10-12 after active immunization (Figure 1A). Typically, immunized mice show a transient drop of body weight the day after the injection of the emulsion and the first...

Discussion

Here, we present a protocol to induce and monitor EAE in female C57BL/6 mice. Females are preferentially chosen, and there is a incidence of women : men of 3:1 in MS. To assess the severity of EAE, we made use of a 3-point scoring sheet. EAE severity is generally scored with respect to the severity of motor dysfunctions. Mice with advanced stages of EAE, i.e. exhibiting a score above 2 should be sacrificed to avoid unnecessary suffering of the animals. Thus, it is recommended to score the mice at close intervals e.g. twi...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
AMCA anti-rabbit antibody	Jackson ImmunoResearch	111-156-045	Store at 4 °C; protect from light
Anti-CD45 Antibody (30F11)	Pharmingen	07-1401	Store at 4 °C
Anti-Laminin Antibody	DAKO	Z0097	Store at 4 °C
Breeding food	e.g. PROVIMI KLIBA SA	3336
Individually ventilated cages, Blue line Type II or III	e.g. Tecniplast	1145T, 1285L
BSA fraction V	Applichem	A1391	Store at 4 °C
Cold gelatine	Sigma-Aldrich	G 9391
Coplin jar + rack	e.g. Carl Roth GmbH + Co. KG	H554.1; H552.1
Cy3 anti-rat antibody	Jackson ImmunoResearch	111-156-144	Store at 4 °C; protect from light
Cover slips 24 x 40 mm # 1	e.g. Thermo Scientific	85-0186-00
Dextran Alexa Fluor 488 (10,000 MW)	e.g. Molecular probes	D22910	Store at -20 °C; protect from light
Dextran Texas Red (3000 MW)	Invitrogen	D3328	Store at -20 °C; protect from light
EnzChek Gelatinase/Collagenase Assay Kit	Thermo Fisher Scientific; EnzCheck	E12055	Store at -20 °C; protect form light
Female C57BL/6J mice (8-12 weeks)	e.g. Janvier Labs		Females, 8-12 weeks
Freezing box for histology slides	e.g. Carl Roth GmbH + Co. KG	2285.1
18G x 1½’’ (1.2mm x 40mm) injection needle	e.g. BD, BD Microlance 3	304622
27G x ¾’’ – Nr. 20 (0.4mm x 19mm) injection needle	e.g. BD, BD Microlance 3	302200
30G x ½’’ (0.3 mm x 13 mm) injection needle	e.g. BD, BD Microlance 3	304000
Incomplete Freund’s adjuvant (IFA)	e.g. Santa Cruz Biotechnology	sc-24648	Store at 4°C
Maintenance food	e.g. PROVIMI KLIBA SA	3436
MOGaa35-55 peptide	e.g. GenScript		Store at -80 °C
microscope slides (Superfrost Plus )	Thermo Scientific	J1800AMNZ
Mycobacterium tuberculosis H37RA	e.g. BD	231141	Store at 4 °C
NaCl 0.9 %	B. Braun	3535789
O.C.T. compound (Tissue-Tek )	Sakura	4583
Omnican 50 30G x ½’’	B. Braun	9151125S
Paraformaldehyde	Merck	30525-89-4
Pertussis toxin	e.g. List biological laboratories, Inc.	180	Store at 4 °C
poly(vinyl alcohole) (Mowiol 4-88)	Sigma-Aldrich	81381
Protease Inhibitor EDTA free (Roche)	Sigma-Aldrich	4693132001	Store at 4 °C
repelling pen e.g. DAKO Pen	e.g. DAKO	S2002
sealing film e.g. Parafilm M	e.g Sigma-Aldrich	P7793
Silica gel	e.g. Carl Roth GmbH + Co. KG	9351.1
Stitch scissor	F.S.T	15012-12
syringe 1 ml	e.g. PRIMO	62.1002
syringe 10 ml	e.g. CODAN Medical ApS	2022-05
vaporizer system Univentor 400	UNO.BV