| 6qt. Stainless Steel Beaker (185 x 218mm) | Gilson | #MA-48 | For liquid nitrogen (Figure 1E) |
| Aluminum foil | | | |
| Cauterizer | Bovie | #AA01 | To mark eye orientation (Figure 1A) |
| Curved forceps, Dumont #5/45 tweezers, 45-degrees bent | Electron Microscopy Sciences | #72703-D | For mouse eye enucleation and maintenance (Figure 1A) |
| Curved scissors, Vannas Spring Scissors - 2.5mm Cutting Edge | Fine Science Tools | #15002-08 | To circumferentially cut the cornea (Figure 1B) |
| Dental wax-coated 35mm dissection dish | | | For eye cup dissection (Figure 1C) |
| Dissecting microscope | Leica, Houston, USA | MZ12.5 High-performance stereomicroscope | |
| Micro Knives - Plastic Handle | Fine Science Tools | #10315-12 | To make a small incision at the burn mark (Figure 1A) |
| Pink dental wax | Electron Microscopy Sciences | #72660 | For coating dissection dish |
| Slide Rack and Coverplate | Ted Pella | #36107 | For retinal IHC (Figure 1G) |
| Stainless Steel Beaker (89 x 114mm) | Gilson | #MA-40 | For isopentane bath (Figure 1E) |
| Styrofoam box | | | For insulated cooler |
| Thin forceps Dumont #5 | Fine Science Tools | #11254-20 | To remove the cornea and extract the lens (Figure 1B) |
| Tissue-Tek cryomold (10mm x 10mm x 5mm) | Electron Miscroscopy Sciences | #62534-10 | Mold for OCT embedding |
| Buffers and Reagents | Company | Catalog Number | Comments |
| Blocking solution | | | 2% Normal Horse Serum, 1.5% Cold Fish skin Gelatin (at 40-50% in H2O, cat #G7765), 5% bovine serum albumin (cat #AK1391-0100) in permeabilization buffer. |
| Gelvatol (anti-fading mounting media) | | | Under the fume hood, dissolve 0.337g DABCO (Sigma cat #D2522-25G) in 10mL Fluoromount G (Fisher cat #OB100-01). Adjust to pH 8-8.5 with 12N HCl (~ 5 drops). Store in amber drop bottle at 4°C (8). |
| Hoechst 33342 1000x Stock | Thermo Scientific | #62249 | 1 mg/ml in PBS (1000x). Aliquot and store in dark, at 4°C for up to 1 year or at -20°C for long term storage. Prepare fresh at 1 ug/mL (1x) |
| Isopentane, 99% | GFS Chemicals | #2961 | |
| Liquid Nitrogen | | | |
| Paraformaldehyde (PFA) in PBS | Electron Microscopy Sciences | #15710 | Prepared fresh 4% PFA from 16% PFA stock. Store the remaining 16% PFA at 4°C in the dark. |
| Permeabilization solution | | | PBS + 0.25% Triton-X (AMRESCO cat #0694-1L) + 0.05% NaN3. Prepare fresh. |
| Phosphate-buffered saline (PBS) | Bioworld | #41620015-20 | 0.02 g/L KCl, 0.02 g/L KH2PO4, 0.8 g/L NaCl, 0.216 g/L Na2HPO4 , pH 7.4. Prepared from 10x stock |
| Sucrose solutions | Fisher Scientific | #S-5-500 | Dissolve the appropriate amount of sucrose in 37°C PBS (takes ~15 min to dissolve). May be stored for a few days at 4°C. |
| Tissue-Tek OCT-compound | Sakura | #4583 | |
| Antibodies | Company | Catalog Number | Comments |
| anti-calbindin | Sigma-Aldrich | C8666 | To label horinzotal cells |
| anti-GAD65 | Chemicon | AB5082 | To label GABAergic amacrine cells |
| anti-GS | BD Transduction | 610517 | To label Müller cells |
| anti-rhodopsin | Millipore | MAB5316 | To label rods |