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Experimental animal procedures were conducted according to the European Communities Council Directive 2010/63/EU, and approved by the Ethics Committee for Animal Experimentation of the Hospital Gregorio Marañón. A graphical summary of the experimental protocol is shown in Figure 1A.
1. Brain target localization by in vivo neuroimaging
- Animal preparation
NOTE: Male Wistar rats of ~300 g were used.
- Place the animal into an anesthesia induction box and seal the top.
- Turn on the sevoflurane vaporizer (5% for induction in 100% O2). When the rat is anesthetized, switch the gas flow to the nosecone. Confirm the state of anesthesia by pinching the rat paw.
- Lay the animal supine on the CT bed, maintaining sevoflurane anesthesia (3% for maintenance in 100% O2).
- CT imaging
NOTE: Selection of amperage, voltage, number of projections, number of shots, and voxel resolution depends on the CT scanner. Here, the following parameters: 340 mA, 40 KV, 360 projections, 8 shots, and 200 µm resolution were used7,8,9.
- Secure the facemask or nose cone to the rat.
- Secure the rat body at the head, shoulders, hips, and tail with silk tape to provide enough restraint without damage.
- Monitor the rat continuously.
- Locate the head in the center of the field of view of the CT scanner.
- Proceed to acquire the CT image using acquisition parameters according to the specifications of the scanner.
- After 10 min, when the in vivo CT scan has been completed, stop the sevoflurane flow and place the rat into the MRI scanner.
- MR imaging
NOTE: Scan acquisition specifications vary among scanners, including different software systems and more importantly, the specific research question. Here, a 7-Tesla scanner was used. A T2-weighted spin-echo sequence 7,8,9 with TE = 33 ms, TR = 3732 ms, and a slice thickness of 0.8 mm (34 slices), matrix size of 256 x 256 pixels with a FOV of 3.5 x 3.5 cm2 was used.
- Lay the animal supine on the MRI bed, maintaining sevoflurane anesthesia (3% for maintenance in 100% O2).
- Secure the head to a stereotactic frame placed on the scanner bed to avoid head movements during MRI acquisition. Also, secure the rest of the rat body with silk tape.
- Locate the head in the center of the field of view of the MRI scanner.
- Once the position is correct, proceed to acquire the MRI image.
- When in vivo MRI scanning is complete, stop the sevoflurane flow and place the rat into its cage.
- Locate a heating lamp near the cage because rats usually reduce their body temperature during the scan.
- Monitor the rat until recovery from anesthesia.
- Atlas co-localization and target coordinates calculation
- Once CT and MRI images are acquired and reconstructed following the scanner's recommendations, co-register the CT and MRI images.
- Use an imaging processing software to spatially normalize CT and MRI using an automatic rigid registration algorithm based on mutual information10.
- Localize the Bregma line in the co-registered image, and measure the distance in the anterior/posterior (AP: +3.5 mm), midline/lateral (ML: +0.6 mm), and dorsoventral (DV: -3.4 mm) axis from Bregma to the target (i.e., medial prefrontal cortex, mPFC), according to the Paxinos and Watson rat brain atlas11.
NOTE: Coordinates from Bregma to the target may differ between rats when weight, size, sex, and breed are different.
2. Stereotaxic surgery
CAUTION: Autoclave all surgical material, implants, and stereotaxic units before use, and disinfect the surgical area to avoid infections and complications which may affect animal welfare. Use sterile surgical gloves and cover the animal with sticky drapes to prevent contamination.
- Animal preparation and anesthesia
- Animals were administered 0.1 mg/kg buprenorphine intraperitoneally the day before the surgery. Place the animal into an anesthesia induction box chamber and seal the top.
- Turn on the sevoflurane vaporizer (5% for induction in 100% O2).
- When the rat is recumbent, turn off the sevoflurane vaporizer and remove the rat from the box chamber.
- Intraperitoneally administer a mixture of ketamine (100 mg/kg) and xylazine (10 mg/kg) to anesthetize the animal.
- Wait until the animal is completely anesthetized. Check the level of anesthesia by pinching the interdigital area.
- Shave the area between the ears and the eyes.
- Placement in the stereotactic frame and craniotomy
- Place the animal in the prone position on the stereotactic frame and use the head holding adaptor for rats to maintain the animal in the correct position during the surgery.
- Ensure immobility of the head by using the rat ear bars. Be careful with the insertion of the ear bars, as too deep an insertion may damage the eardrum.
- Apply ophthalmic lubricating gel to the eyes to prevent dryness during surgery, and cover them with sterile gauze.
- Cover the animal using sticky drapes to prevent contamination.
- Apply iodopovidone solution to the shaved area and clean it with sterile gauze.
- Apply mepivacaine in gel on the shaved area to anesthetize the local area.
- Make a longitudinal incision in the skin overlying the skull between the ears, extending 1.5-2 cm from lambda to Bregma (i.e., from the cranial vertex towards the eyes).
- Expose the skull with the help of 2 or 3 clamps. Remove the periosteum with a cotton bud and clean the blood with saline solution to expose Bregma and the sagittal sutures. Remove the excess saline solution with gauze.
- Scratch the skull surface with a scalpel to improve dental cement adhesion. Clean the area with a cotton bud soaked in hydrogen peroxide.
- Electrode placement and fixation to the skull
- Straighten the electrodes with plastic tweezers to ensure the correct placement during the surgery.
NOTE: Concentric bipolar platinum-iridium electrodes with the ground are used in this protocol.
- Locate one electrode on the holder of the right arm of the stereotactic frame.
NOTE: It might be necessary to adapt the holder to the electrode to fix it better (see Figure 1B). Make sure that the electrode is parallel to the axis of the holder.
- Move the right arm holding the electrode through the stereotaxic frame and place the tip of the electrode exactly over Bregma. Try to bring the electrode tip as close as possible to the skull but without touching it to avoid deformation of the electrode, and note the resulting coordinates for Bregma provided by the stereotaxic frame. Make a mark on the skull indicating the initial position of the electrode with a surgical pen.
- Move the holder to the AP and ML coordinates obtained in step 1.4.3 and make a mark on the skull with a surgical pen indicating the position of the electrode target.
- Remove the right arm of the stereotactic frame holding the electrode. Be careful not to touch anything with the electrode.
- Use a small electric drill to make a hole through the skull (about 1-1.5 mm in diameter) in the target position until the dura is visible. Stop any bleeding using a cotton bud.
- Drill 4 holes along the skull to locate 4 screws (preferably stainless steel screws of 2-3 mm length) to increase the surface area of the dental cement and to locate the ground. Attach the 4 screws.
- Locate the right arm of the stereotactic frame with the right electrode. Move the arm to the calculated position, which should coincide with the hole. Then, lower the electrode until it touches the dura mater. This position will serve as 0 level in the DV direction.
- Insert the tip of the electrode in the DV direction, using the DV position in step 1.4.3. Clean the blood and cerebrospinal fluid around the area of the electrode with a cotton bud.
- Attach the ground to one of the screws closest to the electrode.
- Apply dental cement around the electrode and screws taking care to shape the dental cement avoiding sharp edges, which could injure the animal. Dental cement is applied in a layer to prevent overheating/thermal injury to the tissue/skull. Thick layers require more time to cure before additional layers are added. Ensure the dental cement is completely hardened before removing the electrode from the holder.
CAUTION: The preparation of the dental cement produces the emanation of toxic vapors from the mixture, which finishes with the solidification of the cement. Therefore, wear a protection mask effective against chemical gases from this point and until the end of the surgery.
- Repeat the same procedure from steps 2.3.2-2.3.11 for the other hemisphere of the brain.
- Apply more dental cement to form a cap without covering the electrode. Wait until it hardens.
- Use braided natural silk non-absorbable suture 1/0, with a triangle needle, to suture in front and behind the cap. If required, remove the non-absorbable sutures at a particular time according to the body region where they are located. Use an iodopovidone solution to disinfect the surgical area.
- Remove the rat from the stereotactic frame.
- CT imaging for electrode placement confirmation
- Perform steps 1.2.4-1.2.5 and see Figure 1C.
- Once the in vivo CT scan is complete, place the rat into its cage.
- Follow steps 1.3.6. and 1.3.7.
- Postoperative care
- Administer antibiotic (ceftriaxone, 100 mg/kg, subcutaneous) for 5 days and analgesic (buprenorphine, 0.1 mg/kg, intraperitoneal) for 3 days as postoperative care. This antibiotic regimen may be prolonged for 5 days if any signs of infection (redness, swelling, and exudate) are observed around the cap.
- Perform a visual inspection of each animal daily, searching for signs of pain or distress, and clean the cap with iodopovidone solution.
- Provide intensive care for up to 1 week after surgery.
3. PET/CT imaging acquisition
NOTE: Each animal undergoes two PET/CT studies (i.e., in the absence and during DBS administration) under inhaled anesthesia to assess the acute effects induced by the electrical stimulation. Both scanning sessions follow the same imaging acquisition protocol, being performed 1 week after surgery (D1, without stimulation) and 2 days later (D2, during DBS).
- Animal preparation and anesthesia
- Fast the rat for 8-12 h prior to each PET scan to allow higher brain uptake of FDG, improving the signal-to-noise ratio12.
- Place the animal into an anesthesia induction box and seal the top.
- Turn on the sevoflurane vaporizer (5% for induction in 100% O2).
- When the rat is anesthetized, switch the gas flux to the nosecone.
- FDG injection and uptake period
CAUTION: FDG is a radiotracer, so consider radioprotection measures to avoid radioactivity exposure. Confirm that the institution has all permission to work with radioactive compounds.
- Keep the FDG vial inside a lead-lined cabinet until used to avoid undesirable radioactivity exposure.
- Fill a small gauge syringe (~27G) with ~37 MBq of the FDG solution in the less possible volume, as measured in an activimeter.
- Place a heating pad under the animal's tail or use infra-red light to dilate the tail veins.
- Once the lateral veins are evident in the peak of the tail, clean the area with sanitary alcohol (96%).
- Inject the FDG solution through one of the lateral tail veins, approaching the vein with a syringe parallel to its trajectory and with the bevel of the needle facing upwards.
- Switch off the anesthesia and place the animal back in its cage to recover completely under a heating lamp.
- Allow 45 min of radiotracer uptake before starting the image acquisition session. During this period, keep the animal awake and inside a lead shielded chamber.
- In the case of the D2 study, deliver DBS as explained below in section 4 (Electrical stimulation administration) during the FDG uptake period.
- PET acquisition and imaging reconstruction
NOTE: PET image acquisition specifications depend on the scanner and the scan time. For this protocol, a static PET image was acquired for 45 min with a small-animal PET/CT scanner, using an energy window of 400-700 keV7,8,9. Review the specifications of the PET/CT equipment before designing the acquisition protocol.
- 45 min after FDG injection, place the animal into an anesthesia induction box and seal the top.
- Turn on the sevoflurane vaporizer (5% for induction in 100% O2).
- Transfer the animal to the PET/CT bed and lay it in a supine position, securing the nose to the anesthesia nose cone and maintaining sevoflurane anesthesia (3% for maintenance in 100% O2). Confirm the state of anesthesia by pinching the rat paw.
- Repeat steps 1.2.2 and 1.2.3.
- Locate the head in the center of the field of view of the PET scanner.
- Acquire the static PET image using acquisition parameters according to the scanner's specifications.
- Proceed to reconstruct the image using a 2D-OSEM (ordered subset expectation maximization algorithm) and apply decay and dead time corrections7,8,9.
- When the in vivo PET scan is complete, maintain the flow of sevoflurane to the rat in order to subsequently proceed to the CT acquisition without displacing the animal's head position on the scanner bed.
- CT acquisition
- Without changing the animal's position with respect to the previous PET acquisition, proceed to acquire the CT image.
- Repeat steps 1.2.3-1.2.5.
- Once the in vivo CT scan is completed, stop the sevoflurane flow and place the rat into its respective cage for recovery.
- Follow steps 1.3.6. and 1.3.7.
- Maintain the animal into a lead-shielded chamber until complete radioactivity decay.
4. Electrical stimulation administration
NOTE: Electrical stimulation is delivered during the FDG uptake period in the D2 imaging session. For this protocol, the stimulation was delivered with an isolated stimulator, with a high-frequency (130 Hz) electrical stimulation in a constant current mode, 150 µA, and a pulse width of 100 µs7,13,14.
- DBS stimulator configuration
- Prepare the isolated stimulator and the required wires in a wide and quiet room, with enough space for the animal cages and minimal influence of potentially disturbing stimuli.
- Connect the stimulation wires to the swivels to allow animals to freely move within their cages and to the stimulator.
- Set the stimulation parameters according to the needs of the study.
- Use an oscilloscope to check the current mode, frequency, and pulse width. Confirm the biphasic waveform with a rectangular pulse shape (Figure 1D).
- DBS delivery
- After the D1 imaging session and until the D2 acquisition, subject animals to a daily habituation protocol (45 min/day) to accustom them to the stimulation system and the operator's handling, avoiding undesirable stress responses in D2. Connect the stimulation system to each animal, but without turning on the stimulation.
- Once the stimulator has been set up, and the animal has been injected with FDG, connect the swivel to the electrodes and turn on the stimulator.
- After 45 min, turn off the stimulator, disconnect the animal from the swivel and quickly transfer it to an anesthesia induction chamber to begin step 3.3.

Figure 1: Experimental design. (A) Summary of the experimental steps followed in this protocol. (B) Representative pictures of a holder adaptation for better fixation of the electrode, with (left) and without (right) an electrode. (C) Fused image of an MRI with a CT of an operated animal, showing the correct electrode placement in the medial prefrontal cortex (mPFC). (D) Screenshot of the oscilloscope screen showing the biphasic stimulation waveform. Please click here to view a larger version of this figure.
5. PET image processing and analysis
NOTE: Follow the same image processing on images from D1 and D2 to obtain comparable data for subsequent voxel-wise statistical analysis.
- Spatial registration of PET images
- Use specialized imaging processing software. The whole registration workflow is illustrated in Figure 2.
- Center and crop each PET and CT image to the field of view. Register the PET image to its CT using an automatic rigid registration algorithm based on mutual information15.
NOTE: Rigid registration methods are only appropriate whether there are no significant differences in body weight or size between animals. Otherwise, consider using elastic methods.
- Register each CT image to a reference CT spatially registered to the Paxinos and Watson rat brain atlas11 as in step 5.1.2. Save the resulting transformation parameters.
- Apply the transformation parameters obtained in step 5.1.3. to each registered PET image obtaining the PET image registered to the reference CT image.
- Save all the final PET images in Nifti format.
- Intensity normalization and smoothing of PET images
NOTE: Intensity normalization and smoothing are performed with different in-house scripts based on publicly available resources.
- Smooth the PET images with an isotropic Gaussian kernel of 2 mm of Full-Width Half Maximum (FWHM) to correct possible registration errors.
NOTE: The size of the smoothing filter will depend on the resolution of the PET acquisition, but it is recommended to use a filter of 2-3 times the voxel size of FWHM.
- Normalize the intensity of the PET voxel values using an appropriate reference cluster normalization method16.
- Segment a brain mask from a reference MRI registered to the reference CT image.
- Apply the brain mask to each PET image to exclude voxels outside the brain from the voxel-wise analysis.
- Voxel-wise analysis
NOTE: The statistical analysis, consisting of a voxel-wise analysis of the PET image data, was performed using specialized imaging analysis software17.
- Compare D1 and D2 PET images using a paired T-test, setting adequate statistical significant thresholds.
- Consider as definitive results of the analysis only those clusters larger than 50 adjacent voxels to reduce type I errors.
- Represent the results in T-maps overlaid on a T2 MRI, showing the changes in glucose brain metabolism induced by DBS (cold colors for FDG reduction and warm colors for FDG increment).

Figure 2: Micro PET/CT imaging registration workflow. Detailed steps of PET image spatial normalization processing for subsequent voxel-wise analysis with Statistical Parametric Mapping (SPM) software. Please click here to view a larger version of this figure.