In the following sections, information on material and methods that go beyond the protocol are provided along with the representative results.
Statistics
Data obtained from the protocol mentioned above were stored in spread sheets and analyzed using software for advanced statistical analysis (Table of Materials). Tests for normality (visual inspection of histograms and qq-plots, comparison of mean, standard deviation and median) were carried out for the continuous parameters. Differences between parameters investigated in the voluntary approach test (time duration interacting with trainer and unfamiliar person, front paws-legs touches) were analyzed using the Wilcoxon signed-rank test. Differences between the handling techniques were either analyzed using the Wilcoxon signed-rank test or McNemar test (if binary). Differences were considered significant at p < 0.05. When using the Wilcoxon signed-rank test, the distribution of differences had to be symmetrical according to visual inspection of the histogram.
The study was explorative. Power analysis based on the time duration the rabbits interacted with the "handling devices" was performed after the study (Wilcoxon signed-rank test; power ≥ 0.999) using G*Power (version 3.1.9.7)52.
Habituation
All rabbits except from #4 and #10 ingested food from the reward bowl and let the trainer touch them in all habituation sessions. Rabbit #4 did not accept the food reward in the 1st session but ate four times from the reward bowl in the 2nd session. The amount of reward intake however increased in later sessions and the rabbit could be touched as well. Rabbit #10 also required more time to habituate to the trainer and the food reward. In the first session the rabbit accepted the food reward from the trainer after 5 min but could not be touched. In the 2nd session, interest in the food was not observed. In the subsequent sessions, however, rabbit #10 accepted both food rewards and touches.
Introducing the clicker
Twelve out of thirteen rabbits successfully completed protocol section 4 in a day and associated the food reward (primary reinforcer) with the click (secondary reinforcer) within this training session. The association was tested by observing the rabbits' behavior after the click was presented for the tenth time. When an animal was seeking for the reward immediately after the click, it was assumed that the rabbit associated the primary with the secondary reinforcer. Rabbit #4 did not eat the food reward after the click on day 1. It took rabbit #4 one day longer (i.e., two days) to successfully associate the click and the food reward.
Following the target
Table 1 provides the number of training sessions (given as median, 25th percentile and 75th percentile) required to teach the rabbits the goal behaviors of the protocols. It took the rabbits 2 training sessions (median) to follow the target stick into the training arena (Table 1). All rabbits reached the final step (5.7) of this goal behavior.
Rabbit #4 and rabbit #7 needed 7 and 8 training sessions respectively, before they followed the target stick into the training arena. Since rabbit #7 failed to complete step 5.4 and did not make a hop to follow the target stick, an additional training step (5.3+) was implemented into the protocol after step 5.3. In step 5.3+, the target stick was placed at a wider distance from the rabbit than in 5.3 and the rabbit had to stretch towards it in different directions, but the target stick was still reachable without making a hop. Rabbit #4 had issues with step 5.5 and was not able to follow the target stick, that was placed just in front of the nose/mouth, for a variable number of hops. Therefore, an additional step 5.4+ was added to the protocol. In this case, the target stick was placed just in front of the rabbit's nose/mouth and was then moved into different directions requiring the rabbit to make one hop. The same additional step was also successfully used for rabbit #7. After completing the additional training steps with a success rate of at least 80%, they were able to continue with the following steps.
Weighing
The rabbits needed 1 training session (median) until performing step 6.5 (i.e., staying on the scale for a variable amount of time) (Table 1). All rabbits reached the final step (6.5) of this goal behavior.
Entering transport box
The rabbits successfully performed all steps from 7.1 to 7.6 (i.e., entering and leaving the transport box after lifting) within 2 training sessions (median) (Table 1). All rabbits reached the final step (7.6) of this goal behavior.
When rabbits #2 and #3 successfully performed step 7.6 for the first time(s), they did not want to re-enter the transport box to repeat this step. Therefore, step 7.5+ was created: after the animal followed the target stick towards the box, the reward bowl was held through the lid opening and the animal was lured inside the box. Once the rabbit entered the box, the door was closed, and the box carefully lifted. After placing the box back onto the floor, the door was opened, and rabbit was led with the target stick out of the box. Both animals succeeded in performing step 7.5+ for at least 4 times, followed by step 7.6 on the next day.
Rearing
1 training session (median) was required until the rabbits successfully completed step 8.3 (i.e., placing the front paws onto the trainer's hand) (Table 1). Since 11 out of 13 rabbits (i.e., all except from #3 and #7), failed to perform step 8.3, an additional training step 8.2+ after 8.2 was defined for these animals. In step 8.2+, the target stick was moved above the rabbit's head so that the rabbit lifted the front paws off the ground and touched the target with the nose/mouth. While the rabbit was touching the target, the trainer approached and touched the front paws (palmar surface) with the palm of her free hand. After step 8.2+ was successfully carried out in at least four out of five attempts, step 8.3 was trained again and completed.
Jumping on lap
2.5 training sessions (median) were necessary to train the rabbits in steps 9.1. to 9.9. (Table 1). Ten rabbits were able to reach the final step 9.9 (i.e., accepting their paws to be touched while sitting on the trainer's lap). Rabbit #4 reached only step 9.2 (i.e., placing her front paws onto the trainer's legs) and rabbit #10 reached step 9.3 (i.e., jumping on the trainer's lap). Rabbit #7 reached step 9.3+, which was an additional interim step after step 9.3. In this case, the rabbit placed the front paws onto the trainer's legs, as described in step 9.2, and was then lured with the reward bowl on the trainer's lap. Once all the four paws were placed onto the trainer's lap, the click and reward were presented. This step was successfully added to the protocol for eight rabbits to facilitate performing the following steps.
Generalization
To evaluate whether the rabbits generalized the trained clues to perform the goal behaviors with other persons than the trainer, a female animal caretaker, who was familiar to the rabbits but had only little previous experiences in clicker training, asked the rabbits to perform the trained goal behaviors "weighing", "entering transport box", "rearing", and "jumping on lap". If a rabbit did not previously learn the final step of "jumping on lap", the last successful training step should be demonstrated.
The sessions took place on five consecutive days after the 3-week training was completed (Figure 1). The animal caretaker read the training protocols before the 1st session. At the beginning of the 1st session, the trainer gave a brief demonstration of all goal behaviors. Then she stayed in the pen, gave instructions during sessions, and documented which step of the goal behaviors the rabbits displayed. If a rabbit failed to show a particular step, the animal caretaker was instructed to return to the previous step in the protocol.
All rabbits except from rabbit #4 performed the goal behaviors "weighing", "entering transport box", and "rearing" (data given as median) after 1 session, 2 sessions, and 2 sessions, respectively (Table 2). Rabbit #4 was not willing to show any steps of these goal behaviors.
Eight out of ten animals that were able to show the final step of "jumping on lap" (9.9) demonstrated this behavior after 3 sessions (median). Although rabbit #3 and #11 had previously learned the final step of "jumping on lap" (9.9), they only showed step 9.3 with the animal caretaker. Rabbit #4, #7, and #10 showed the same step as with the trainer (9.2, 9.3+, and 9.3).
Performance of goal behaviors after 1-week training breaks
To test whether the animals could retain the final steps of "weighing", "entering transport box", "rearing", and "jumping on lap", the trainer retrieved the goal behaviors one week and two weeks after the generalization sessions (Figure 1). During these breaks, the animals were not trained and did not receive any rewards.
At both time points, all rabbits were able to perform the final steps of "weighing" (6.5), "entering transport box" (7.6), and "rearing" (8.3) they learned in the previous 3-week training. Animals (n = 10) that learned the final step of "jumping on lap" (9.9) showed this behavior at both time points; those that did not learn the final step of this goal behavior (n = 3) were able to demonstrate the last step they previously reached (rabbit #4: step 9.2; rabbit #7: step 9.3+, rabbit #10: step 9.3) after the first 1-week break. After the second 1-week break, these three rabbits showed the same steps as the week before but were also asked to perform the next steps and reached step 9.9.
Performance of goal behaviors after a training break of approximately 8.5 weeks
After the animals had a training break of approximately 7.5 weeks (#1-5, #13) or 9.5 weeks (#6-12), the goal behaviors were recalled again. All animals were able to show the final step of "weighing" (6.5), "entering transport box" (7.6), and "rearing" (8.3). Twelve rabbits displayed the final step of "jumping on lap" (9.9) while rabbit #7 only placed her front paws onto the trainer's legs and stretched forward to touch the target with her nose/mouth (9.3).
Voluntary approach towards the familiar trainer and an unfamiliar person
Three weeks after the training, voluntary approach behavior of the rabbits was tested to investigate their interaction with the familiar trainer and an unfamiliar person (both female). Before the test, both persons showered using the same shower gel and shampoo, put on the same kind of clothes and protective equipment (gloves, masks, hair nets). Two 5-min trials were performed with a 2-min break between the trials in the animal pen. As shown in Figure 4A, the familiar trainer and an unfamiliar person sat (in the same position) opposite to each other on the floor of the pen, with the back facing the wall of the pen. Two houses were removed from the pen; the remaining house and the tunnel were placed near the other two walls at the same distance from both persons. In the 2nd trial, they swapped their seat locations to consider potential place preferences of the rabbits. They neither moved nor talked during the 5-min trials. If a rabbit chewed on their trousers and pinched their leg, a hand was gently moved towards the rabbit to make her stop. It should be noted that the observations of the individual animals were made within the group, i.e., the rabbits could interact with each other during both trials.
The videos were analyzed retrospectively using BORIS53. According to the ethogram defined for this investigation, a rabbit interacted with a person when all four paws were in the square of 70 cm × 70 cm around a person or on the border line of this square. Moreover, it was monitored whether a rabbit placed both front paws onto the legs or jumped onto the lap (with all four paws being placed on the lap).
Figure 4B shows the time duration the rabbits interacted with the two persons. Wilcoxon signed-rank test revealed that the interaction time with the trainer and unfamiliar person significantly differed in the 1st trial (z = -2.040, p = 0.041, Pearson correlation coefficient r = 0.57) but not in the 2nd trial (z = 0.245, p = 0.807, r = 0.07). In the 1st trial, the rabbits spent more time interacting with the trainer.
Three (#1, #5, #6) and five (#1, #6, #7, #8, #12) rabbits placed their front paws onto the trainer's legs in trial 1 and 2, respectively. Five animals jumped with all four paws onto the trainer's lap (trial 1: #1, #3, #5, #6; trial 2: #9). While four animals (#1, #2, #8, #9) in the 1st trial and three (#1, #4, #8) animals in the 2nd trial climbed with their front paws onto the unfamiliar person's legs, none of them jumped with all four paws onto her lap. The mean of the differences between the number of "front paws-legs touches" neither significantly differed between the trainer and the unfamiliar person in trial 1 (z = -0.264, p = 0.792, r = 0.07) nor in trial 2 (z = -0.707, p = 480, r = 0.20).
Effect of handling techniques on the rabbits' behavior towards the "handling device"
To investigate whether the techniques used for lifting the rabbits from the floor affected their behavior, a 2-min behavioral observation was performed after this procedure within the context of the general examination on two consecutive days (Figure 1). This observation was carried out for seven animals.
On day 1, the rabbits were picked up with the transport box. For this, they followed the target stick into the box, the box was closed and brought to the examination table, as described in training step 7.5. Here they were gently lifted from the box to the table, with both hands/arms placed below/around the animal's body. A health inspection (including palpation of the body, visual inspection of ears, eyes, nostrils, incisors, anogenital region) was carried out and a food reward was offered to them subsequently. After the health inspection, they were gently guided with the hands into the transport box. The target stick was not used on the examination table to ensure that the trainer's hands were free to secure the animals. When the rabbits entered the transport box again and the door was closed, the box was transferred to the pen and the door was opened. The rabbit was made to follow the target stick and leave the box, followed by the presentation of the food reward, as described in training step 7.6.
On day 2, the rabbits were picked up by the conventional technique, routinely used by the animal caretakers (i.e., they were restrained by the scruff of their neck with one hand and briefly lifted onto the other arm with the head facing the crook of the arm). Then they were transferred to the examination table and a health inspection was performed, as described above. After the health inspection, a food reward from the reward bowl was offered to them. Finally, they were again restrained by the scruff of their neck and briefly lifted onto the arm to bring them back to the pen. After they were released, a food reward was offered to them again.
After the food reward was offered to the rabbits in the pen, the trainer sat on the floor of the pen without interacting with the rabbits and a 2-min video was recorded, which was analyzed retrospectively using BORIS53. It should be noted that the observations of individual animals were made within the group because they should be monitored in their familiar environment. This means the rabbits could interact with each other. The following parameters were investigated and defined: Time duration spent interacting with trainer or transport box (i.e., a rabbit was in the interaction zone of the trainer or the transport box when the nose was less than a body-length away from the trainer or the box); time duration spent in transport box (i.e., this event occurred when the animal was in the interaction zone of the box; it started when the rabbits entered the box with all four paws and stopped when one or more paws were placed outside the box); time duration spent eating (i.e., the rabbit ingested straw, hay, pellets, or feces; chewing the trainer's clothes or shoes was not considered as eating); time duration spent hiding (this event started when the rabbit entered a house or tunnel with all four paws; it stopped when the rabbit left the shelter with one or more paws); jumping on lap (i.e., the rabbit jumped onto the trainer's lap and placed all four paws onto it; this event occurred when the animal was in the interaction zone of the trainer); placing front paws on legs (i.e., the rabbit placed both front paws onto the trainer's legs; this event occurred when the animal was in the interaction zone of the trainer).
The behavioral analysis was performed by the trainer and a person fully blinded to the procedure carried out. According to Landis and Koch54, the interrater reliability between the trainer and the blinded person calculated using BORIS53 (Cohens Kappa) was substantial to almost perfect. For further analysis, data extracted by the blinded observer was used.
Wilcoxon signed-rank test revealed that the conventional handling technique significantly reduced the duration spent interacting with the "handling device", i.e., sum of time duration spent interacting with the trainer and box after being picked up (z = 2.366, p = 0.018, r = 0.89; Figure 5A). The handling technique did not significantly affect the time duration of interaction with the trainer (z = 1.014, p = 0.310, r = 0.28; Figure 5B). In contrast, picking the rabbits up by the box increased the time duration they interacted with the box (z = 2.366, p = 0.018, r = 0,66; Figure 5C) and spent in the box (z = 2.201, p = 0.028, r = 0.61; Figure 5D) when compared to the conventional handling technique. Moreover, the animals spent more time hiding in the shelters after they were picked up by the conventional handling technique (z = -1.992, p = 0.046, r = 0.046; Figure 5F).
The handling technique had no significant effect on the time duration the animals spent eating (z = 0.944, p = 0.345, r = 0.26; Figure 5E), the number of rabbits placing their front paws onto the trainer's legs (McNemar: p = 1.000) or jumped onto the trainer's lap (McNemar: p = 0.500). Independent of the handling technique, rabbit #9 jumped onto the trainer's lap and rabbit #12 placed her front paws onto the trainer's legs. Additionally, rabbits #8 and #11 put their front paws on their legs after being picked up by the transport box.
While the food reward offered on the examination table was ingested by all rabbits after the brief transport in the box, only one rabbit (#8) accepted it after the conventional handling technique. This difference was significant (McNemar: p = 0.031). In the pen, the food reward was accepted by six rabbits (i.e., all except from #7) after leaving the transport box and four rabbits (#7, #9, #10, and #12) after being released from the arm (conventional handling technique; McNemar: p = 0.625).

Figure 1: Time schedule. All habituation, training, and generalization sessions as well as behavioral observations were carried out in the morning before feeding and cleaning. In week 1 (i.e., four days after arrival), five contextual conditioning/habituation sessions (Monday to Friday; protocol section 3) were carried out by the animal caretakers and the corresponding author (all female), followed by a 3-week training period in weeks 2-4 (Mondays to Fridays; protocol section 4-9). Training sessions were conducted by the corresponding author who is a veterinarian specialized in laboratory animal science and experienced in training rabbits, mice, chickens, and horses. After that, behavioral observations were made on two consecutive days to investigate whether the technique used for lifting the rabbits from the floor affected their behavior. In week 5, five generalization sessions (Monday to Friday) were conducted to evaluate whether the rabbits would perform the goal behaviors learned with another person than the trainer. In week 6 and week 7 (on Thursdays) as well as in week 14 (Monday/Tuesday), the trainer tested within the context of the weekly general health inspection whether the rabbits could retain and show the goal behaviors. A voluntary approach test with the trainer and an unfamiliar person was carried out in week 7 to investigate the rabbits' behavioral responses towards familiar versus unfamiliar humans. Please click here to view a larger version of this figure.

Figure 2: Training arena. The training arena (see Table of Materials) was set up a few minutes before the training began. (A) To facilitate transport and installation, the arena consisted of two pieces, which were connected to each other in the pen. (B) Two rows of transparent plastic panels created an arena of approximately 136 cm × 90 cm × 70 cm. The door was attached to the other panels using cable ties allowing to open and close it. The door can be locked using a clip. As the walls of the training arena were transparent, a rabbit had visual, olfactory, and acoustical contact with the group members when it entered the training arena. A low stool/step as a seat for the trainer and, depending on the goal behavior to be trained, a scale or a transport box can be placed in the arena. Please click here to view a larger version of this figure.

Figure 3: Reward bowl with integrated clicker. The reward bowl was 3D printed using white polylactic acid (PLA). Size of square bowl: 8 cm × 8 cm × 3 cm; size of cylindrical handle: 9.5 cm × 2.3 cm. A finger clicker (see Table of Materials) was attached to the handle. A 3D print file for the reward bowl can be found in Supplementary Coding File 1. Please click here to view a larger version of this figure.

Figure 4: Voluntary approach test. (A) In the two 5-min trials, the familiar trainer and an unfamiliar female person sat opposite each other in the pen, with the back facing the wall of the pen. A house and a tunnel were placed near the other two walls at the same distance from both persons. (B) The duration time spent interacting with a person was analyzed for each rabbit. A rabbit interacted with a person when all four paws were in the square of 70 cm × 70 cm around a person or on the border line of this square. The symbols indicate the data of each individual animal. Please click here to view a larger version of this figure.

Figure 5: Effects of handling techniques on the rabbits' behavior. (A-F) Illustrations of behavioral data collected from seven rabbits after they were handled either by the transport box or by the conventional technique (i.e., they were restrained by the scruff of their neck and lifted on the arm). Since trainer and transport box were considered as "handling devices", (A) This panel shows the sum of panel B and C. The symbols indicate the data of each individual animal. Please click here to view a larger version of this figure.
| Rabbit | Number of training sessions needed to train the goal behavior |
| Following the target | Weighing | Entering transport box | Rearing | Jumping on lap |
| #1 | 1 | 1 | 2 | 2 | 2 |
| #2 | 1 | 1 | 4 | 1 | 5 |
| #3 | 2 | 1 | 3 | 1 | 4 |
| #4 | 7 | 2 | 1 | 3 | 2 (step 9.2) |
| #5 | 2 | 1 | 3 | 1 | 3 |
| #6 | 2 | 1 | 2 | 1 | 1 |
| #7 | 8 | 1 | 2 | 2 | 3 (step 9.3+) |
| #8 | 2 | 1 | 2 | 1 | 1 |
| #9 | 2 | 1 | 2 | 1 | 2 |
| #10 | 2 | 2 | 3 | 3 | 5 (step 9.3) |
| #11 | 2 | 1 | 2 | 2 | 4 |
| #12 | 2 | 1 | 1 | 1 | 1 |
| #13 | 2 | 3 | 1 | 2 | 4 |
| Median (25th–75th percentile) | 2 | 1 | 2 | 1 | 2.5 |
| (2–2) | (1–1.5) | (1.5–3) | (1–2) | (1–4)* |
Table 1: Number of sessions needed to train the goal behaviors. If a rabbit did not learn the final step of a goal behavior, the last training step reached is indicated in brackets.
Definition of a training session: approximately 30 mins per group (6-7 animals); Mondays to Fridays over three weeks; starts when the trainer sits in the pen and is prepared to begin the training; ends when either none of the rabbits participates in the training anymore or all rabbits reached a final step of a goal behavior; an animal can perform more than one trial per session.
* Rabbits #4, #7, #10 were excluded from this calculation since they did not reach the final step of "jumping on lap".
| Rabbit | Number of training sessions until final step of goal behavior was reached |
| Weighing (5 training steps) | Entering transport box (6 training steps) | Rearing (3 training steps) | Jumping on lap (9 training steps) |
| #1 | 1 | 3 | 1 | 1 |
| #2 | 1 | 3 | 1 | 1 |
| #3 | 1 | 3 | 1 | F (9.3) |
| #4 | F | F | F | 3 (9.2) |
| #5 | 2 | 3 | 2 | 2 |
| #6 | 1 | 1 | 3 | 3 |
| #7 | 1 | 1 | 3 | 3 (9.3+) |
| #8 | 1 | 1 | 1 | 3 |
| #9 | 1 | 1 | 1 | 3 |
| #10 | 1 | 3 | 3 | 3 (9.3) |
| #11 | 1 | 1 | 3 | F (9.3) |
| #12 | 1 | 1 | 3 | 3 |
| #13 | 1 | 3 | 2 | 5 |
| Median (25th–75th percentile) | 1 | 2 | 2 | 3 |
| (1–1) | (1–3) | (1–3) | (1.25–3) |
| (excluding #4) | (excluding #4) | (excluding #4) | (excluding #3, #4, #7, #10, #11) |
Table 2: Generalization. In five sessions (Monday to Friday), an animal caretaker familiar to the rabbits asked the rabbits to perform the final steps (or the last step reached) of the trained goal behaviors. If the final step of a goal behavior was not reached, the last training step reached is indicated in brackets. F (failure) was indicated when an animal did not show the last step of a goal behavior previously reached in the training. Definition of a session: Monday to Friday over one week; starts when the animal caretaker and trainer sit in the pen; ends when either none of the rabbits participates (anymore) or all rabbits showed the final step (or the last step reached) of a desired goal behavior; an animal can perform more than one trial per session.
Supplementary Coding File 1: 3D print file "reward bowl". Polylactic acid (PLA) can be used for the print. Please click here to download this File.
Supplementary File 1: Documentation sheet for six rabbits. The sheet should be printed or opened on a tablet to document the training progress of each rabbit. In each training session, it must be noted which training steps the individual animals reached or whether adaptations to the protocol were required. Any special occurrences (e.g., external factors, impaired health status) should also be documented. Please click here to download this File.
Supplementary File 2: Simplified training protocols. The tables describe the steps of the protocol sections 3-9 in a simplified manner. For further detail, the protocol steps of the main manuscript should be read. Please click here to download this File.