Method Article

Isolation and Cryopreservation of Highly Viable Human Peripheral Blood Mononuclear Cells From Whole Blood: A Guide for Beginners

DOI:

10.3791/66794

October 25th, 2024

In This Article

Summary

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

This protocol presents an accessible guide for collecting, storing, and thawing peripheral blood mononuclear cells suitable for downstream analyses and workflows like flow cytometry and RNA sequencing. Plasma and buffy coat collections are also demonstrated.

Abstract

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

Peripheral blood mononuclear cells (PBMCs) are commonly used in biomedical research on the immune system and its response to disease and pathogens. This detailed protocol describes the equipment, supplies, and steps for isolating, cryopreserving, and thawing high-quality and highly viable PBMCs from whole blood cells suitable for downstream applications such as flow cytometry and RNA-sequencing. Protocols for processing plasma and buffy coat from the whole blood in parallel and concurrently with PBMCs are also described. This easy-to-follow step-by-step protocol, which utilizes density gradient centrifugation to isolate PBMCs, is accompanied by a checklist of supplies, equipment, and preparation steps. This protocol is suitable for individuals with any prior experience with laboratory techniques and can be implemented in clinical or research laboratories. High-quality cell viability and RNA sequencing resulted from PBMCs collected by operators with no prior laboratory experience using this protocol.

Introduction

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

This protocol demonstrates an accessible method and workflow for the isolation of peripheral blood mononuclear cells (PBMCs) from whole blood. This protocol is especially targeted towards novice research technicians, students, and clinical lab staff with the objective of facilitating the collection and cryopreservation of PBMCs without assuming prior training in laboratory techniques.

This protocol utilizes centrifugation to separate the components of whole blood by density. Whole blood consists of four main components listed in order of decreasing density: red blood cells/erythrocytes (~45% of volume), white blood cells (<1% of volume), platelets (<1% of volume), and plasma (~55% of volume)1,2,3,4,5,6. White blood cells can be subdivided into two categories based on their nuclei characteristics: round or multi-nucleated6. PBMCs are defined as white blood cells with round nuclei and consist of the following cell types: lymphocytes (T cells, B cells, NK cells), dendritic cells, and monocytes6. Multi-nucleated white blood cells include granulocytes, which consist of the following cell types: neutrophils, basophils, and eosinophils6. Multi-nucleated white blood cells are denser than PBMCs6. The densities of each component of whole blood are detailed in Table 1.

In this protocol, whole blood is collected in density gradient centrifugation tubes. These tubes contain a pre-packed density gradient medium that has a density of 1.077 g/mL. Following centrifugation, denser cells, including multi-nucleated white blood cells and erythrocytes, are separated from PBMCs and platelets by the density gradient medium (Figure 1A)6,7. The PBMC and platelet fraction is then collected, washed, and centrifuged to remove platelets. The resulting purified PBMCs are collected and stored at -80 °C or in liquid nitrogen. Cryopreserved PBMCs may be viably thawed and directly used in downstream analyses or additionally processed to isolate specific component cell types.

This protocol has been optimized for high-quality RNA sequencing from highly viable PBMCs. In this article, PBMCs were isolated and cryopreserved from patients in an outpatient clinic. Subsequently, monocytes were isolated from PBMCs by FACS and analyzed via RNA-sequencing. However, the protocol can be widely adapted to other experimental needs such as cell culture, gene editing, ex-vivo functional studies, single-cell analyses, phenotyping by flow cytometry or cytometry by time of flight, isolation of DNA/RNA or proteins, slides for immunohistochemistry, amongst others8,9,10,11,12,13,14,15,16,17,18.

In addition to PBMC collection from density gradient centrifugation tubes, this protocol reviews how to collect plasma and buffy coat via centrifugation using an EDTA tube. After centrifugation, whole blood is separated into plasma, erythrocytes, and a thin interface layer termed buffy coat containing leukocytes (Figure 1B)6. The buffy coat is commonly used for DNA extraction and subsequent genomic analyses19,20. The plasma layer contains the cell-free components of whole blood and can be used for biomarker assays21,22.

Protocol

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

The study protocol was approved by the UCSD and KUMC Human Protections Program and conforms to the Declaration of Helsinki. All individuals provided informed consent for participation and blood collection.

1. Processing and cryopreservation of PBMCs

  1. One day prior to the blood collection, print out the checklist of materials and reagents listed in Table 2 and prepare and label accordingly.
    NOTE: This protocol was designed for the collection of 6 density gradient centrifugation tubes. Each tube yields roughly 12 million PBMCs, of which approximately 50% and 20% will be live lymphocytes and monocytes respectively. Scale accordingly for experimental needs. Note that the absolute number of cells may differ significantly between patients or treatment conditions.
  2. Using the standard phlebotomy technique, collect whole blood in 6 density gradient centrifugation tubes and 1 EDTA tube until filled, approximately 6 mL of volume.
    NOTE: If samples from multiple patients or treatment conditions are required, the collected tubes may be stored up to 4 h and then processed simultaneously.
  3. After collection, centrifuge all tubes at 1,800 x g for 20 min at room temperature.
    NOTE: Refer to Supplemental Video 1 for a demonstration of how to operate a centrifuge.
  4. After centrifugation, carefully open the density gradient centrifugation tube. Use a transfer pipette to remove and discard the translucent yellow layer containing plasma. Do not disturb the hazy layer of cells directly above the density gradient medium. Err on the side of caution, leaving excess plasma rather than discarding PBMCs. Repeat for all tubes.
    NOTE: After centrifugation of the tube containing the density gradient medium, plasma and PBMCs will be above the density gradient medium; erythrocytes and granulocytes will settle to the bottom. Refer to Figure 1A for a visualization.
  5. With a new transfer pipette, pipette the remaining volume containing cells and residual plasma in each tube up and down gently several times above the density gradient medium.
  6. After resuspension, pipette the resuspended contents of the tube into a labeled 50 mL conical tube. Repeat for all tubes.
  7. Pour Solution 1 (RPMI Medium) into the 50 mL tube until it reaches the 50 mL line.
  8. Repeat steps 1.4 to 1.7 for each patient or treatment condition as needed.
    NOTE: Ensure that different samples are not mixed and use a new transfer pipette to avoid contamination.
  9. Centrifuge the 50 mL tube at 300 x g for 10 min at room temperature.
    NOTE: The plasma and buffy collection protocol detailed in Section 2 may be completed during this time.
  10. Discard as much supernatant as possible. Tap as needed to remove residual drops.
    NOTE: Following centrifugation, the pellet contains PBMCs, and the supernatant contains platelets and residual plasma.
  11. Pour a 15 mL tube of Solution 2 (RPMI Medium + 12.5% Human Serum Albumin + 1 µM Flavopiridol) into the 50 mL conical tube containing the PBMC pellet. Gently invert the tube to resuspend the cell pellet.
  12. Aspirate 15 mL of Solution 3 (RPMI Medium + 11.25% Human Serum Albumin + 1 µM Flavopiridol + 10% DMSO) using a transfer pipette. Add dropwise to the 50 mL tube.
    NOTE: Solution 3 contains DMSO, which is toxic to cells at room temperature. Do not add Solution 3 until it is ready to be immediately processed.
  13. Invert the tube gently 3 times to mix.
  14. Fill each pre-labeled and pre-chilled cryovial with 1 mL of PBMCs using a multi-dispense pipette.
    NOTE: Refer to Supplemental Video 2 for a demonstration of how to operate a multi-dispense pipette.
  15. Place the cryovials inside a pre-chilled freezing container. Then, move the container to a -80 °C freezer.
  16. Repeat steps 1.9 to 1.13 for each patient or treatment condition as needed.
  17. Keep the cryovials inside the freezing container for a minimum of 12 h, then transfer them to a labeled storage box at -80 °C.
    NOTE: Alternatively, transfer the frozen cryovials to liquid nitrogen (<-135 °C) for long-term storage.

2. Processing of plasma and buffy coat from EDTA tubes

  1. Centrifuge at 1,800 x g for 10 min at room temperature. 
    NOTE: After centrifugation, the top layer consists of plasma, the bottom contains erythrocytes, and the interface will be the buffy coat. See Figure 1B for a visualization.
  2. Using a new transfer pipette, draw up as much plasma as possible without disturbing the buffy coat layer. Then, dispense 0.5 mL aliquots into prelabeled cryovials. Aspirate the buffy coat layer and transfer it to the appropriately labeled cryovial.
    NOTE: Some plasma and erythrocytes may contaminate the buffy coat collection.
  3. Repeat step 2.2 for each patient or treatment condition as needed.
  4. After collection, store the cryovials in a -80 °C freezer.
    NOTE: Alternatively, store in liquid nitrogen (<-135 °C) for long-term storage.

3. Thawing PBMCs

  1. One day before thawing, print out a checklist of materials and reagents listed in Table 3 and prepare and label accordingly.
    NOTE: This protocol was designed for the thawing of 1 1.5 mL tube containing 1 mL of PBMCs. Each tube yields approximately 2 million PBMCs, of which approximately 50% and 20% will be live lymphocytes and monocytes, respectively. Scale accordingly for experimental needs. Note that the absolute number of cells may differ significantly between patients or treatment conditions.
  2. Transfer frozen PBMCs from storage using dry ice and thaw in a 37 °C incubator for 4 min, or just prior to the last ice crystal thawing.
    NOTE: If desired, an aliquot can be taken for cell counting and viability measurements, as detailed in Section 4.
  3. After thawing, add 1 mL of Solution 4 (PBS + 2 mM EDTA) to each cryovial. Then, pour the contents into a pre-labeled 50 mL tube containing 10 mL of Solution 4 for every PBMC tube thawed. Tap to remove residual drops.
  4. Place the cell strainer on the empty 50 mL tube and then pour the cell suspension through the cell strainer.
    NOTE: If needed, lightly tap to break the surface tension.
  5. Centrifuge each tube containing the strained cells at 400 x g for 7 min at room temperature.
  6. After centrifugation, pour out the supernatant containing DMSO. Tap as needed to remove residual drops.
  7. Resuspend the cell pellet in the desired medium appropriate for downstream experimental needs (e.g., cell culture media, flow cytometry antibody cocktail, etc.).

4. Cell counting and viability

  1. Immediately after thawing frozen PBMCs in step 3.2, pipette 20 µL of cells into a 1.5 mL tube. Add an equal volume of 0.4% Trypan Blue solution and pipette up and down gently 3-4 times to mix.
  2. Using an automated cell counter, follow the manufacturer's protocol to count cells and assess viability. Ensure that the dilution factor of 2 is accounted for.
    NOTE: As described elsewhere, a hemocytometer may be used as an alternative method for assessing cell count and viability23.

Results

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

Following PBMC collection and cryopreservation, viability of thawed PBMCs, monocytes, and lymphocytes from 56 unique samples was assessed by flow cytometry using reagents listed in Table 4 following manufacturers' instructions (Figure 2A-F). A mean ± SD viability of PBMCs, monocytes, and lymphocytes of 94 ± 4.0%, 98 ± 1.1%, and 93 ± 5.6%, respectively, was achieved (Figure 2G). Viability measurement by Trypan Blue exclusion yielded a mean viability of 88 ± 7.5% and a cell count of 2.3 x 106 ± 1.9 x 106. Flow cytometry analysis also demonstrated that live monocytes comprised 17 ± 5.9% and lymphocytes made up of 53 ± 13.0% of total PBMCs.

Subsequently, monocytes were sorted from thawed PBMCs from 59 unique samples by flow cytometry and submitted for library preparation and RNA-sequencing as described elsewhere24. A mean ± SD total sequence count of 18.0 ± 16.3 million was achieved with a 93 ± 6.3% read alignment and 49.6 ± 1.4% GC content (Figure 3A-B). A mean ± SD uniquely mapped reads percentage of 88 ± 3.6% was found with a subset of 56 unique samples. These parameters demonstrate that highly viable PBMCs suitable for downstream applications, including high-quality RNA sequencing, can be obtained by operators with any level of laboratory training using this protocol.

ComponentDensity Citation
Plasma1.022 g/mL to 1.026 g/mL1
Platelets<1.061 g/mL to >1.070 g/mL2
PBMCs<1.077 g/mL6
Low density neutrophils*<1.077 g/mL3
Granulocytes (neutrophils*, basophils, and eosinophils)>1.077 g/mL6
Erythrocytes1.11 g/mL4

Table 1: Components of whole blood listed by order of decreasing density.

Reagant/MaterialAmount (per 6 CPT tubes and 1 EDTA tube)TipCaution Statements
CPT Tubes6Label according to patient or sample ID.
EDTA Tube1Label according to patient or sample ID.
50 mL conical tube2In addition to patient or sample ID, label 1 tube for PBMCs and 1 for waste.
Cryovials39Label 30 for PBMCs, 8 for EDTA plasma, and 1 for buffy coat. Not all cryovials may be used.
Mr. Frosty2Fill up to the halfway mark with isopropanol and pre-chill overnight at -20°C.Isopropanol is a flammable irritant. Keep away from sparks/flames. Avoid inhaling and handle with gloves and care.
Flavopiridol100 µL of 1000X stockTo prepare 1000X flavopiridol stock, suspend 5 mg flavopiridol in 1.14 mL of DMSO for a concentration of 10 mM. Aliquot 200 µL into individual containers then freeze. To use, thaw individual aliquots and dilute 1:10 in DNase/RNase-free distilled water, and then use as a 1000X solution.Flavopiridol is an irritant. Handle with gloves and care.
Solution 150 mLRPMI Medium.
To make 50 mL of stock solution, use 50 mL of RPMI Medium.
Solution 215 mLRPMI Medium + 12.5% Human Serum Albumin + 1 µM Flavopiridol.
To make 50 mL of stock solution, use 25 mL RPMI medium + 25 mL Human Serum Albumin + 50 µL 1000X Flavopiridol.
Flavopiridol is an irritant. Handle with gloves and care.
Solution 315 mLRPMI Medium + 11.25% Human Serum Albumin + 1 µM Flavopiridol + 10% DMSO.
To make 50 mL of stock solution, use 22.5 mL RPMI medium + 22.5 mL HSA + 5 mL DMSO + 50 µL 1000X Flavopiridol.
Flavopiridol is an irritant and DMSO is toxic and is readily absorbed through skin. Handle with gloves and care.

Table 2: Checklist of reagents and materials to prepare and label for collecting and cryopreserving PBMCs.

Reagant/MaterialAmount (per 1 mL aliquot of frozen PBMCs)TipCaution Statements
Solution 410 mLPBS + 2 mM EDTA

To make 50 mLs of stock solution, use 5 mL 10X PBS + 200 µL 0.5M EDTA + 44.8 mL DNase/RNase-free distilled water
50 mL conical tube3In addition to patient or sample ID, label 1 tube for pre-strained PBMCs, 1 for post-strained PBMCs, and 1 for waste. Fill the tube labelled for pre-stained PBMCs with 9 mLs of solution 4 per mL of frozen PBMCs
1.5 mL tube1For cell counting; label with patient or Sample ID
0.4% Trypan Blue Solution20 µLFor cell counting; can be added to the 1.5 mL tube ahead of time the day before.Trypan Blue is a carcinogen. Handle with gloves and care.

Table 3: Checklist of reagents and materials to prepare and label for thawing and counting PBMCs.

Reagent/MaterialAmount (per million cells)
Live-Dead Stain5 μL
Human Trustain FcX5 μL
CD3 Antibody5 μL
CD19 Antibody5 μL
CD56 Antibody5 μL
CD66b Antibody5 μL
HLA-DR Antibody5 μL
CD14 Antibody5 μL
CD16 Antibody2.5 μL
RNAsin100 Units

Table 4: Table of reagents for isolation of monocytes from PBMCs by flow cytometry.

Blood component separation in density gradient centrifugation diagram; plasma, PBMCs, buffy coat layers.
Figure 1: Whole blood components as separated by centrifugation in density gradient centrifugation or EDTA tubes. (A) Centrifugation of whole blood in density gradient centrifugation tubes results in the separation of plasma, platelets, and PBMCs above the density gradient medium with multi-nucleated and erythrocytes below the density gradient medium. (B) Centrifugation of whole blood in EDTA tubes results in the separation of plasma in the topmost layer, erythrocytes in the bottom layer, and the buffy coat in the interface. Created with Biorender.com. Please click here to view a larger version of this figure.

Flow cytometry scatter plots; PBMCs, monocytes, lymphocytes; viability analysis, cell type graph.
Figure 2: The viability of thawed cryopreserved PBMCs was assessed by live/dead flow staining and flow cytometry. (A) Debris, denoted by an asterisk *, is excluded from PBMCs by forward and side scatter gating. (B) Representative live/dead analysis of whole PBMCs (C) Pan-monocytes are gated as HLA-DR positive and negative for the following FITC-labeled surface antigens: CD3, CD19, CD56, and CD66b. (D) Representative live/dead analysis of monocytes. (E) Lymphocytes gated by the following FITC labeled surface antigens: CD3, CD19, CD56, and CD 66b. (F) Representative live/dead analysis of lymphocytes. (G) Percent viability of each cell type quantified from 56 samples. Please click here to view a larger version of this figure.

FastQC data analysis graphs; Million Sequences vs Alignable, GC Content Distribution.
Figure 3: RNA-sequencing quality of monocytes sorted from cryopreserved PBMCs. 56 unique samples were sequenced and a mean ± SD 18.0 ± 16.3 million total sequences were generated. (A) Alignment was high, with 92.5% ± 6.3% of the sequences aligning with the reference genome. (B) The GC content of these sequences was 49.6 ± 1.4%. Created with FastQC25. Please click here to view a larger version of this figure.

Supplementary Video 1: Demonstration of how to use the centrifuge Please click here to download this File.

Supplementary Video 2: Demonstration of how to operate a multi-dispenser pipette. Please click here to download this File.

Discussion

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

This protocol for PBMC collection and cryopreservation has been successfully implemented by individuals with and without prior research laboratory training. In our application, FACS and RNA-sequencing of highly viable monocytes purified from stored PBMCs resulted in high-quality sequences.

A major strength of this protocol is its accessibility. The technique presented in the protocol utilizes tubes pre-packed with a solid-density gradient medium. As a result, whole blood can be collected directly into the tube and then immediately processed to isolate PBMCs. A relatively small number of premade solutions and specialized equipment is needed, facilitating collaboration between the research laboratory, where reagents may be prepared, and the clinical laboratory, where samples are collected and processed. The written and video protocols are geared towards operators at any level of training.

While this protocol utilizes fresh whole blood to isolate PBMCs and, therefore, has a relatively high expected yield and purity of >90%, it may not be suitable for applications necessitating exceptionally high purities of >98%26,27. Moreover, density gradient centrifugation tubes can be costly to obtain, especially if a large number of samples need to be collected.

Alternative methods of PBMC collection include the use of a liquid density gradient medium or immunomagnetic depletion28,29. Briefly, the former involves layering a pre-made density gradient medium under heparinized whole blood followed by centrifugation. The latter utilizes magnetically tagged antibodies to label non-PBMCs, which are then retained in a magnetic column while unlabeled PBMCs pass through unaffected.

Relative to the presented protocol, the use of a liquid density gradient medium is both less costly and necessitates much less material due to the lack of density gradient centrifugation tubes; PBMC isolation can be performed in a standard 50 mL tube8. However, this technique is more elaborate, has a longer processing time, and may be subject to a higher risk of user error. Heparin must be precisely added to avoid over-dilution and the density gradient medium must be layered carefully in the correct amounts to ensure good PBMC separation26.

Relative to the presented protocol, the use of immunomagnetic depletion offers higher yield and purity, reduced handling due to lack of centrifugation, a faster processing time, and necessitates much less material30,31,32. However, the main downside is that this method is the costliest of the three methods described, especially at scale.

While this protocol is robust, certain critical steps may require additional attention. Throughout the protocol, ensure that samples are not mixed and are placed into the appropriately labelled tubes, especially when working with multiple patients or conditions simultaneously. For step 1.4, ensure that no PBMCs are discarded; excess plasma will only decrease the concentration of PBMCs, which is less critical in maintaining sample viability and quality. Separately, the presence of precipitates in collected PBMCs suggests that pieces of the density gradient medium were dislodged. Pipette more gently in step 1.5 to prevent this issue. In steps 1.10 and 3.6, ensure that the centrifuged cell pellet is not discarded. Working expeditiously is critical for step 1.12 and 3.3 as Solution 3 contains DMSO, which is toxic to cells at room temperature33. It is also important to note that storage of PBMCs in liquid nitrogen is recommended over storage at -80°C. Long-term storage at -80°C has been associated with decreased cell viability and altered gene expression34,35.

This protocol may be adapted according to experimental needs. The addition of flavopiridol, an inhibitor of RNA polymerase and mRNA synthesis, in Solutions 2 and 3 is intended to prevent any handling and stress induced artifact with RNA-sequencing36. However, flavopiridol may be omitted if functional or ex vivo studies utilizing PBMCs are desired.

Plasma collected from EDTA tubes will become contaminated with EDTA, a chelating agent. As a result, EDTA plasma is unsuitable for assays involving coagulation or calcium ions37,38. If desired, the plasma layer in the density gradient medium tubes post-centrifugation can instead be collected in step 1.4. These tubes contain sodium heparin as an anticoagulant which can be removed with the addition of heparinase39. Notably, heparin inhibits reverse transcriptase and PCR amplification, making the collected plasma unsuitable for PCR experiments without the addition of a heparin-blocking agent40.

The collected buffy coat from EDTA tubes is not stored in a solution containing DMSO or flavopiridol. DMSO is important in reducing ice crystal formation and cell death41. Flavopiridol is important for the inhibition of RNA synthesis36. Thus, the buffy coat is unsuitable for ex vivo and transcriptomic analyses. If desired, steps 1.6 to 1.15 can be performed using collected buffy coat in order to maximize cell viability and inhibit RNA synthesis.

While this protocol was designed for RNA-sequencing, additional potential applications of PBMCs collected and cryopreserved using this protocol include cell culture, gene editing, ex-vivo functional studies, single cell analyses, phenotyping by flow cytometry or cytometry by time of flight, isolation of DNA/RNA or proteins, slides for immunohistochemistry, amongst others.

Disclosures

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

The authors have no relevant financial or non-financial interests to disclose.

Acknowledgements

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

We'd like to thank the patients who volunteered their consent, time, and donation of blood samples. We also acknowledge Dr. Patrick Moriarty, Julie-Ann Dutton, and Mark McClellen at the Kansas University Medical Center for their collaboration and for implementing this protocol at a remote site. CY has received research support from NIH grant 1K08HL150271.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
1000 µL TipsGilsonF174501Approximately 3 tips needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
15 mL tubeBiopioneeerCNT-15To hold Solutions 2/3
2 needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
2 mL CryovialsGlobe Scientific3012Approximately 40 cryovials needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
20 µL TipsGilsonF174201For use in cell counting; volume needed is dependent on method of cell counting used. 1 tip is needed per 1 mL of unpooled frozen PBMCs to be defrosted
50 mL Conical TubeCEM Corporation50-187-76832 needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
3 needed per 1 mL of unpooled frozen PBMCs to be defrosted
CD14 AntibodyBiolegend325621
CD16 AntibodyBiolegend360723
CD19 AntibodyBiolegend363007
CD3 AntibodyBiolegend300405
CD56 AntibodyBiolegend318303
CD66b AntibodyBiolegend305103
Cell StrainerBiopioneeerDGN2583671 needed per 1 mL of unpooled frozen PBMCs to be defrosted
CPT Mononuclear Cell Preparation TubeBD Biosciences3627536 tubes needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Cryo Freezer BoxSouthern LabwareSB2CC-81Holds 81 tubes
1 needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Cryotube RackFisherbrand05-669-45Holds up to 50 cryovials
DMSOInvitrogen15575020Approximately 2.5 mL needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
DNase/RNase-Free Distilled WaterInvitrogen10977015Approximately 2 mL needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Approximately 9 mL needed per 1 mL of frozen PBMCs to be defrosted
EDTA TubesBD Biosciences3666431 tube needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
FlavopiridolSigma-AldrichF3055-5MG
HLA-DR AntibodyBiolegend307609
Human Serum AlbuminGeminiBio800-120Approximately 25 mL needed per patient or treatment condition for PBMC/Plasma/Buffy Coat Collection
Human Trustain FcXBiolegend422301
IsopropanolSigma-AldrichW292912-1KG-KFor use in Mr. Frosty
Label PrinterPhomemoM110-WH
Live-Dead StainBiolegend423105
Mr. FrostyThermo Scientific5100-0001Holds up to 18 tubes.
2 Mr. Frostys needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Multidispense PipetteBrandtech705110
Multidispense Pipette TipsBrandtech705744Approximately 3 tips needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
P1000 PipetteGilsonF144059M
P20 PipetteGilsonF144056MFor use in cell counting; volume needed is dependent on method of cell counting used.
Printer LabelsPhomemoPM-M110-3020Approximately 45 labels needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Approximately 5 labels needed per 1 mL of unpooled frozen PBMCs to be defrosted
RNase-Free EDTA (0.5 M)InvitrogenAM9260GApproximately 40 µL needed per 1 mL of frozen PBMCs to be defrosted
RNase-Free PBS (10X)InvitrogenAM9625Approximately 1 mL needed per 1 mL of frozen PBMCs to be defrosted
RNasinPromegaN2111
RPMICorning10-040-CVApproximately 80 mL needed per patient or treatment condition for PBMC/Plasma/Buffy Coat Collection
Transfer PipettesFisherbrand13-711-7MApproximately 5 needed per patient/treatment condition for PBMC/Plasma/Buffy Coat Collection
Tube HolderEndicott-Seymour14-781-15Holds up to 80 CPT/EDTA Tubes

References

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,
  1. Physiology, Blood Plasma. , StatPearls Pubs. Treasure Island, Florida. (2018).">Mathew, J., Sankar, P., Varacallo, M. Physiology, Blood Plasma. , StatPearls Pubs. Treasure Island, Florida. (2018).
  2. The effect of thrombin on the density distribution of blood platelets: Detection of activated platelets in the circulation. Blood. 62 (2), 433-438 (1983).">Van Oost, B., Van Hien-Hagg, I. H., Timmermans, A. P., Sixma, J. J. The effect of thrombin on the density distribution of blood platelets: Detection of activated platelets in the circulation. Blood. 62 (2), 433-438 (1983).
  3. On the origin of low-density neutrophils. Journal of Leukocyte Biology. 107 (5), 809-818 (2020).">Hassani, M., et al. On the origin of low-density neutrophils. Journal of Leukocyte Biology. 107 (5), 809-818 (2020).
  4. Sorting cells by their density. PLOS ONE. 12 (7), e0180520(2017).">Norouzi, N., Bhakta, H. C., Grover, W. H. Sorting cells by their density. PLOS ONE. 12 (7), e0180520(2017).
  5. Blood volume analysis: A new technique and new clinical interest reinvigorate a classic study. JNMT. 35 (2), 55-63 (2007).">Manzone, T. A., Dam, H. Q., Soltis, D., Sagar, V. V. Blood volume analysis: A new technique and new clinical interest reinvigorate a classic study. JNMT. 35 (2), 55-63 (2007).
  6. The impact of food bioactives on health: In vitro and ex vivo models. , Springer. Cham. 161-167 (2015).">Kleiveland, C. R. The impact of food bioactives on health: In vitro and ex vivo models. , Springer. Cham. 161-167 (2015).
  7. Advances in biomarker detection: Alternative approaches for blood-based biomarker detection. Adv Clin Chem. 92, 141-199 (2019).">Rosado, M., et al. Advances in biomarker detection: Alternative approaches for blood-based biomarker detection. Adv Clin Chem. 92, 141-199 (2019).
  8. Multiple sclerosis: Methods and Protocols. 1304, Humana Press. New York, NY. 53-61 (2016).">Riedhammer, C., Halbritter, D., Weissert, R. Multiple sclerosis: Methods and Protocols. 1304, Humana Press. New York, NY. 53-61 (2016).
  9. In vitro Culture of Human PBMCs. Bio Protoc. 3 (3), e322(2013).">Panda, S. K., Ravindran, B. In vitro Culture of Human PBMCs. Bio Protoc. 3 (3), e322(2013).
  10. Whole blood vs PBMC: Compartmental differences in gene expression profiling exemplified in asthma. Allergy Asthma Clinic Immol. 15, 67(2019).">He, D., et al. Whole blood vs PBMC: Compartmental differences in gene expression profiling exemplified in asthma. Allergy Asthma Clinic Immol. 15, 67(2019).
  11. Lymphocyte enrichment using CD81-targeted immunoaffinity matrix. Cytometry Part A. 91 (1), 62-72 (2017).">Pelák, O., et al. Lymphocyte enrichment using CD81-targeted immunoaffinity matrix. Cytometry Part A. 91 (1), 62-72 (2017).
  12. Impact on in-depth immunophenotyping of delay to peripheral blood processing. Clin Exp Immunol. 217 (2), 119-132 (2024).">Higdon, L. E., et al. Impact on in-depth immunophenotyping of delay to peripheral blood processing. Clin Exp Immunol. 217 (2), 119-132 (2024).
  13. Photoactivatable aptamer-CRISPR nanodevice enables precise profiling of interferon-gamma release in humanized mice. ACS Nano. 18 (4), 3826-3838 (2024).">Liu, Z., et al. Photoactivatable aptamer-CRISPR nanodevice enables precise profiling of interferon-gamma release in humanized mice. ACS Nano. 18 (4), 3826-3838 (2024).
  14. Single-cell transcriptome revealed dysregulated RNA-binding protein expression patterns and functions in human ankylosing spondylitis. Front Med. 11, 1369341(2024).">Ren, Z., Li, C., Wang, J., Sui, J., Ma, Y. Single-cell transcriptome revealed dysregulated RNA-binding protein expression patterns and functions in human ankylosing spondylitis. Front Med. 11, 1369341(2024).
  15. Systematic immune cell dysregulation and molecular subtypes revealed by single-cell-RNA-seq of subjects with type 1 diabetes. Genome Med. 16, 45(2024).">Honardoost, M. A., et al. Systematic immune cell dysregulation and molecular subtypes revealed by single-cell-RNA-seq of subjects with type 1 diabetes. Genome Med. 16, 45(2024).
  16. Possible role of lncRNAs in amelioration of Parkinson's disease symptoms by transplantation of dopaminergic cells. NPJ Parkinsons Dis. 10, 56(2024).">Amini, A., Esmaeili, F., Golpich, M. Possible role of lncRNAs in amelioration of Parkinson's disease symptoms by transplantation of dopaminergic cells. NPJ Parkinsons Dis. 10, 56(2024).
  17. Sars-Cov-2 spike induces intestinal barrier dysfunction through the interaction between CEACAM5 and Galectin-9. Front Immunol. 15, e1303356(2024).">Luo, Y., et al. Sars-Cov-2 spike induces intestinal barrier dysfunction through the interaction between CEACAM5 and Galectin-9. Front Immunol. 15, e1303356(2024).
  18. Immune cell alterations and PI3k-PKB pathway suppression in patients with allergic rhinitis undergoing sublingual immunotherapy. Adv Ther. 41 (2), 777-791 (2024).">Zhang, X., Wu, G., Ma, X., Cheng, L. Immune cell alterations and PI3k-PKB pathway suppression in patients with allergic rhinitis undergoing sublingual immunotherapy. Adv Ther. 41 (2), 777-791 (2024).
  19. Exploring mitochondrial DNA copy number in circulating cell-free DNA and extracellular vesicles across cardiovascular health status: A prospective case-control pilot study. FASEB J. 38 (10), e23672(2024).">Rucci, C., et al. Exploring mitochondrial DNA copy number in circulating cell-free DNA and extracellular vesicles across cardiovascular health status: A prospective case-control pilot study. FASEB J. 38 (10), e23672(2024).
  20. Buffy coat DNA Methylation Profile is Representative of Methylation Patterns in White Blood Cell Types in Normal Pregnancy. Front Bioeng Biotechnol. 9, e782843(2022).">Ghamrawi, R., et al. Buffy coat DNA Methylation Profile is Representative of Methylation Patterns in White Blood Cell Types in Normal Pregnancy. Front Bioeng Biotechnol. 9, e782843(2022).
  21. Plasma biomarker profiles in autosomal dominant Alzheimer's disease. Brain. 146 (3), 1132-1140 (2023).">Johansson, C., et al. Plasma biomarker profiles in autosomal dominant Alzheimer's disease. Brain. 146 (3), 1132-1140 (2023).
  22. Comparison of plasma lipoprotein composition and function in cerebral amyloid angiopathy and Alzheimer's disease. Biomedicines. 9 (1), 72(2021).">Bonaterra-Pastra, A., et al. Comparison of plasma lipoprotein composition and function in cerebral amyloid angiopathy and Alzheimer's disease. Biomedicines. 9 (1), 72(2021).
  23. Estimation of cell number by hemocytometry counting. Cold Spring Harb Protoc. (11), prot097980(2019).">Green, M. R., Sambrook, J. Estimation of cell number by hemocytometry counting. Cold Spring Harb Protoc. (11), prot097980(2019).
  24. Monosodium urate crystals regulate a unique JNK-dependent macrophage metabolic and inflammatory response. Cell Rep. 38 (10), e110489(2022).">Cobo, I., et al. Monosodium urate crystals regulate a unique JNK-dependent macrophage metabolic and inflammatory response. Cell Rep. 38 (10), e110489(2022).
  25. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ (2015).">Andrews, S. Fastqc: A quality control tool for high throughput sequence data. , http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ (2015).
  26. Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPT™) and standard density gradient. BMC Immunology. 16, 48(2015).">Corkum, C. P., et al. Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPT™) and standard density gradient. BMC Immunology. 16, 48(2015).
  27. Delays during PBMC isolation have a moderate effect on yield but severely compromise cell viability. Clin Chem Lab Med. 60 (5), 701-706 (2022).">Golke, T., et al. Delays during PBMC isolation have a moderate effect on yield but severely compromise cell viability. Clin Chem Lab Med. 60 (5), 701-706 (2022).
  28. Isolation of whole mononuclear cells from peripheral blood and cord blood. Curr Protoc Immunol. 85 (1), 7.1.1-7.1.8 (2009).">Fuss, I. J., Kanof, M. E., Smith, P. D., Zola, H. Isolation of whole mononuclear cells from peripheral blood and cord blood. Curr Protoc Immunol. 85 (1), 7.1.1-7.1.8 (2009).
  29. Contribution of heptose metabolites and the cag pathogenicity island to the activation of monocytes/macrophages by Helicobacter Pylori. Front Immunol. 12, e632154(2021).">Faass, L., et al. Contribution of heptose metabolites and the cag pathogenicity island to the activation of monocytes/macrophages by Helicobacter Pylori. Front Immunol. 12, e632154(2021).
  30. Immunomagnetic bead separation of mononuclear cells from contaminating granulocytes in cryopreserved blood samples. Cryobiology. 59 (3), 366-368 (2009).">Preobrazhensky, S. N., Bahler, D. W. Immunomagnetic bead separation of mononuclear cells from contaminating granulocytes in cryopreserved blood samples. Cryobiology. 59 (3), 366-368 (2009).
  31. Low-density granulocyte contamination from peripheral blood mononuclear cells of patients with sepsis and how to remove it - A technical report. Front Immunol. 12, e684119(2021).">Schenz, J., Obermaier, M., Uhle, S., Weigand, M. A., Uhle, F. Low-density granulocyte contamination from peripheral blood mononuclear cells of patients with sepsis and how to remove it - A technical report. Front Immunol. 12, e684119(2021).
  32. Cellular stress assay in peripheral blood mononuclear cells: factors influencing its results. Int J Mol Sci. 23 (21), 13118(2022).">Tessema, B., Riemer, J., Sack, U., König, B. Cellular stress assay in peripheral blood mononuclear cells: factors influencing its results. Int J Mol Sci. 23 (21), 13118(2022).
  33. abc. Chen, X., Thibeault, S. 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), , IEEE. 6228-6231 (2013).
  34. The effects of storage temperature on PBMC gene expression. BMC Immunol. 17, 6(2016).">Yang, J., et al. The effects of storage temperature on PBMC gene expression. BMC Immunol. 17, 6(2016).
  35. Effects of long-term cryopreservation of PBMC on recovery of B cell subpopulations. J Immunol Methods. 495, e113081(2021).">Ticha, O., Moos, L., Bekeredjian-Ding, I. Effects of long-term cryopreservation of PBMC on recovery of B cell subpopulations. J Immunol Methods. 495, e113081(2021).
  36. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo. J of Biol Chem. 276 (34), 31793-31799 (2001).">Chao, S. -H., Price, D. H. Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo. J of Biol Chem. 276 (34), 31793-31799 (2001).
  37. The role of ethylenediamine tetraacetic acid (EDTA) as in vitro anticoagulant for diagnostic purposes. Clin Chem Lab Med. 45 (5), 565-576 (2007).">Banfi, G., Salvagno, G. L., Lippi, G. The role of ethylenediamine tetraacetic acid (EDTA) as in vitro anticoagulant for diagnostic purposes. Clin Chem Lab Med. 45 (5), 565-576 (2007).
  38. Effects of heparin, citrate, and EDTA on plasma biochemistry of sheep: Comparison with serum. Res Vet Sci. 86 (1), 111-114 (2009).">Mohri, M., Rezapoor, H. Effects of heparin, citrate, and EDTA on plasma biochemistry of sheep: Comparison with serum. Res Vet Sci. 86 (1), 111-114 (2009).
  39. Heparin-mediated PCR interference in SARS-CoV-2 assays and subsequent reversal with heparinase I. J Virol Methods. 327, 114944(2024).">Edwards, K., et al. Heparin-mediated PCR interference in SARS-CoV-2 assays and subsequent reversal with heparinase I. J Virol Methods. 327, 114944(2024).
  40. Effects of heparin on polymerase chain reaction for blood white cells. J Clin Lab Anal. 13 (3), 133-140 (1999).">Yokota, M., Tatsumi, N., Nathalang, O., Yamada, T., Tsuda, I. Effects of heparin on polymerase chain reaction for blood white cells. J Clin Lab Anal. 13 (3), 133-140 (1999).
  41. Efficient long-term cryopreservation of pluripotent stem cells at -80  °C. Sci Rep. 6 (1), 34476(2016).">Yuan, Y., et al. Efficient long-term cryopreservation of pluripotent stem cells at -80  °C. Sci Rep. 6 (1), 34476(2016).

Reprints and Permissions

Request permission to reuse the text or figures of this JoVE article

Request Permission

Tags

Peripheral Blood MononuclearPBMC IsolationDensity Gradient CentrifugationCell CryopreservationBuffy CoatEDTA PlasmaFlow CytometryRNA SequencingCell ViabilityMonocyte Sorting

Related Articles