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Method Article

Live Imaging and Characterization of Microglia Dynamics and Interactions with Synapses in Diseased Murine Retina

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DOI:

10.3791/68420

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January 16th, 2026

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In This Article

Summary

This paper demonstrates a method for visualizing and quantifying microglia motility and contact with postsynaptic puncta in the retina using spinning disk confocal microscopy.

Abstract

Microglia are the resident macrophages of the central nervous system (CNS) that respond to tissue infection and injury. In addition to their role in inflammation, microglia play a developmental role in circuit refinement through synaptic pruning. However, the mechanisms of synaptic pruning in neuroinflammation and neurodegeneration remain unknown. In this protocol, we use a mouse retina explant model to study microglia dynamics ex vivo. To examine microglia motility and their interactions with postsynaptic proteins, we label synapses with AAV-PSD95-RFP and record timelapse videos of motile microglia colocalized with postsynaptic proteins using spinning disk confocal microscopy. We then create surface and spot reconstructions of microglia and PSD95 using image analysis software. Data such as microglia displacement length, process speed, and contact with postsynaptic puncta can then be extracted from these surfaces to understand microglia behavior both in homeostatic states and after neuronal injury. This protocol can be useful in examining the role of microglia in synaptic pruning in retinal neurodegenerative diseases.

Introduction

Circuit function and homeostasis rely on highly regulated synapse firing and other unique interactions among various cell types1. Serving as the resident macrophages of the central nervous system (CNS), microglia are a non-neuronal population in the retina that play a unique role in synaptic pruning. During CNS development, microglia prune non-functional or weak synapses to refine neural circuitry2. Microglia in the developing brain survey their environment and are primed towards a neuroprotective role during critical periods3. In visual system development, microglia are key regulators in the deve....

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Protocol

Animals were housed at the University of California, San Francisco, under light cycles of 12 h light and 12 h dark and given water and standard diet ad libitum, unless specified. All procedures were approved by the Institutional Animal Care and Use Committees at the University of California, San Francisco. See the Table of Materials for materials and instruments used in this protocol. An overview of the experimental procedure, from intravitreal injection to imaging and analysis, is shown in Figure 1.

1. AAV-PSD95-TagRFP virus production and efficiency

  1. Construct AAV-PSD95-ta....

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Results

Microglia from CX3CR1-GFP murine retinas were imaged using the described protocol. Mice ranged from P30 to P60 at the time of AAV-PSD95-RFP injection, and at least 21 days had elapsed to allow for AAV expression. Representative images of microglia and their interactions with PSD95 puncta before and after analysis are shown in Figure 2. To induce microglia activation, we used the murine laser-induced ocular hypertension (LIOH) model, a model that transiently e.......

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Discussion

This protocol enables the visualization and tracking of individual microglia interaction with postsynaptic sites along the dendrites of RGCs. In a neurodegenerative disease such as glaucoma, microglia colocalize with synapses in the inner plexiform layer (IPL) of the retina. The role of microglia in synapse disassembly is not well understood. However, microglia potentially contribute via several potential mechanisms, including aberrantly engulfing synapses, passively clearing debris from apoptosing cells, or a combinatio.......

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Disclosures

The authors have no conflicts of interest to declare.

Acknowledgements

PSD-95pTagRFP was a gift from Johannes Hell (Addgene plasmid #52671; RRID: Addgene_52671), while the capsid version, 7m8, was a gift from John Flannery and David Schaffer (Addgene plasmid # 64839; RRID: Addgene_64839). We would like to thank Aparna Lakkaraju for allowing us to use their lab's spinning disk microscope and Nilsa La Cunza for guidance in live imaging. We would also like to thank Felice Dunn, Annika Balraj, and Luca Della Santina for helpful discussions and comments on this manuscript. We thank Suling Wang for assistance in data analysis on Imaris. This work was funded by NIH-NEI EY028148 and EY034973 to Y.O., the ARVO David L. Epstein award to Y....

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
25 Gauge NeedleAlcon8065420920
26s Gauge 10 µL SyringeHamilton701RNWG
7m8Addgene64839http://n2t.net/addgene:64839
Bend-and-Stay Multipurpose 304 Stainless Steel WireStanford Advanced MaterialsSS3368Steel wire to make rings
Calcium Chloride HexahydrateSigma-AldrichC5080-500G
Dissection MicroscopeAmscopeTo dissect and mount retinas
Dissection ScissorsFST15024-10
D-(+)-GlucoseSigma-AldrichG7528-250G
ForcepsDumont11252-21
HEPESSigma-AldrichH3375-500G
Imaris 10.0.2Oxford InstrumentsAnalysis software
Imaris File ConverterOxford Instruments
Loctite Super Glue Ultra Gel ControlLoctite1363589Glue for making rings
Magnesium Chloride HexahydrateSigma-AldrichM9272-100G
MCE Membrane filter paper (13 mm)MilliporeHABG013000.45 μm Pore Size
Microenvironmental ChamberTokai HitSTXG-TIZBX-SET
Nikon Eclipse Ti2-E inverted microscopeNikon
NIS ElementsNikon
Neomycin and Polymyxin B Sulfaes and Bacitracin Zinc Opthalamic Solution Ointment, USPBausch + Lomb24208-780-55
Paintbrush Size 00Amazon
Prism 8.0GraphPad
Proparacaine Hydrochloride Opthalmic Solution USP, 0.5%Sandoz61314-0016-01
PDL-coated petri dish (35 mm)MatekP35GC-1.5-14-CNo 1.5 Coverslip
PSD95_pTagRFPAddgene52671http://n2t.net/addgene:52671
Potassium ChlorideSigma-AldrichP9333-500G
Sodium ChlorideSigma-AldrichS7653-1KG
Sodium Phosphate Monobasic MonohydrateSigma-AldrichS9638-25G

References

  1. Wu, Y. K., Hengen, K. B., Turrigiano, G. G., Gjorgjieva, J. Homeostatic mechanisms regulate distinct aspects of cortical circuit dynamics. Proc Natl Acad Sci USA. 117 (39), 24514-24525 (2020).
  2. Paolicelli, R. C., et al. Synaptic pruning by microglia is nec....

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