The protocol describes standard operating procedure for testing potentially biodegradable materials both synthetic and natural under aerobic conditions using a natural seawater inoculum and automated closed loop respirometry system.
Method Article
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| 0.2 µm, 47 mm cellulose acetate filter | Geotech Geofilter | 83100056 | Filter seawater |
| 100 mL Volumetric pipet | Thermo Fisher Scientific, Fisherbrand | 13-650-2U | Class A; acid leached and rinsed with deionized water |
| 100-600 mL Glass beakers | Thermo Fisher Scientific, Fisherbrand | 50-194-5690 | Class A; acid leached and rinsed with deionized water |
| 20 mm milling balls | Retsch | 53680062 | Stainless steel. Used with milling jar for cryogenic milling of polymer |
| 50 mL milling jars | Retsch | 14620216 | Stainless steel. Used with Mixer Mill 400 and 20 mm milling balls for cryogenic milling of polymer |
| 75 mL Volumetric pipet | Thermo Fisher Scientific, Fisherbrand | 13-650-2T | Class A; acid leached and rinsed with deionized water |
| Air pump and bubbler system | Tetra | 77846 | Aerate seawater during pre-incubation equilibration |
| Aluminum foil | Fisherbrand | 01-213-100 | Cover for autoclaving and clean storage |
| Ammonium chloride (NH4Cl) | Thermo Fisher Scientific, Fisher Chemical | A661-500 | Seawater nutrient spike |
| Analytical balance | Mettler | AT201 | To weigh out experimental and control substrates |
| Autoclave | Tuttnauer | MFI-TTN-3870EA | To sterilize vessels and lid assemblies |
| Base Micro-Oxymax 120VAC Single Channel | Columbus Instruments | 0135-8000 | Used to store positive controls and polymer |
| Calibration gas | Airgas | X03NI92P3000001 | Primary Standard Gas Mixtures; 2.7% Carbon dioxide, 4.5% Methane, balance Nitrogen |
| Computer Monitor | Dell | 210-BMKK | Dell Pro 24 Plus USB-C Hub Monitor. Used with computer to run Micro-Oxymax software |
| Cryogenic Gloves | Thermo Fisher Scientific, Tempshield, Cryo Gloves | 11-394-306 | Used to handle liquid nitrogen |
| Dial Thermometer | Thermo Fisher Scientific, H-B Instrument Durac | 13-201-433 | Calibrated thermometer for seawater temperature at time of collection |
| Disposable pipettes | Thermo Fisher Scientific, Fisherbrand | 13-711-7M | Rinse sides of vessel to free up material |
| ENC52 Temperature and Light Controlled Enclosure | Columbus Instruments | 4740-4054 | Maintain temperature and light conditions |
| Flask Tongs | Thermo Fisher Scientific, Fisherbrand | S07387 | Used to handle milling jars in liquid nitrogen |
| Flasks, 250 mL | DWK Life Sciences | 14395-250 | Sample reactor vessels |
| Glass Shell Vials with Plug Style Closures | Thermo Fisher Scientific, Fisherbrand | 03-339-26D | Sample storage |
| H22PX Handheld Depthfinder | West Marine, Norcross Marine | 6849368 | Determine seawater collection site depth |
| Handheld GPS 73 | Garmin | 10-01504-00 | Used to determine seawater collection site location |
| HDPE Pan | Thermo Scientific, Nalgene | 13-359-26 | Used to acid leach glassware in 10% HCl solution |
| Hydrochloric Acid (acidic water solution) | Thermo Fisher Scientific, Fisher Chemical | A144-212 | Certified ACS Plus, 36.5 to 38.0%. CO2 sensor check and acid leaching glassware |
| Laminar flow hood | Air Science | FLOW-48-A | Minimize airborne contaminants during sample preperation |
| Large Niskin; Beta Plus Bottle Only - 8.2L Horizontal, PVC | Science First | 3-1980-H65 | For seawater collection from pier or boat |
| Liquid Nitrogen Pan | Thermo Fisher Scientific, Bel Art Magic Touch 2 | 11-999-063 | Hold Liquid Nitrogen |
| Liquid Nitrogen Transfer Vessel, 10 L | Thermo Scientific | TY509X2 | Store and dispense liquid nitrogen for cryomilling |
| Liquid Nitrogen, Industrial Grade, 22 PSI | Airgas | NI 180LT22 | Used to embrittle and mill polymers |
| Mechanical Sieve Shaker | Humbolt, Grainger | 5DPL6 | Sieve analysis for particle size distribution |
| Micro-Oxymax | Columbus Instrumentts | 7395-113-D64 | Silicon sealed o-ring, metal port w/ 3 fittings, and GL45 screw cap |
| Micro-Oxymax 10 Channel Expansion Interface | Columbus Instruments | 0135-8101 | Respirometry System Component |
| Micro-Oxymax Respirometer (3% CO2 sensor) | Columbus Instruments | 0135-8403 | Non-dispersive infrared |
| Mixer Mill 400 | Retsch | 207450001 | Mixer Mill 400. Used for cryogenic milling of polymer |
| Motorized pipette controller | Eppendorf | 4430000018 | Transfer seawater to sample reactor vessels |
| Narrow-Mouth Amber HDPE Lab Quality Bottle, 1 L | Thermo Scientific, Nalgene | 02-923-5 | Discrete wholewater seawater sample |
| Nylon Mesh 20 Micron | ELKO Filtering Co. | 41718 | Used to sieve raw seawater to remove larger heterogeneous particulates |
| Open Air Orbital Shaker | Thermo Fisher Scientific | SK4000 | Maintain orbital motion of reactor vessels during incubation |
| OptiPlex 5090 Small Form Factor Computer | Dell | C0SL03 | Desktom computer used to run Micro-Oxymax software |
| pH/Cond Meter | Mettler Toledo, SevenExcellence S470-Basic | 30046252 | Benchtop pH/conductivity meter to measure initial and final seawater inoculum |
| Polyethylene bottle, 60 mL | Qorpak | PLC-03564 | Discrete filtered seawater sample |
| Potassium phosphate monobasic (KH2(PO4)) | Thermo Fisher Scientific, Fisher BioReagents | BP362-500 | Seawater nutrient spike |
| Precision balance | Sartorius | Practum2102-1S | To weigh out tare and whole weight of vessels |
| Round Carboy, 20 L | Thermo Fisher Scientific | 02961A | Acid-leached for seawater storage |
| Safety Goggles | Thermo Fisher Scientific, Fisherbrand | 19-181-513 | |
| Scoopula | Thermo Fisher Scientific, Fisherbrand, Scoopula | 01-257-567 | Stainless steel lab scoopula |
| Sieves | Advantech, Grainger | 40PR18-40PR55 | Stainless steel sieves. Number of sieves and sizes will depend on the material being tested. |
| Sigmacell Cellulose, Type 101 | Sigma-Aldrich | 435236-250G | Powder, positive control substrate |
| Sodium Bicarbonate | Thermo Fisher Scientific, Fisher Chemical | S233-500 | CO2 sensor check |
| Sodium sulfite, anhydrous, 98% | Thermo Fisher Scientific, Thermo Scientific Chemicals | AAA1793336 | CO2 sensor check |
| Thermometer/thermistor probe | Fisherbrand | 15-079-700 | Verify incubator temperature |
| Traceable Precision Dial Barometer | Fisherbrand | 14-648-51 | Record atmospheric pressure at start of experiment |
| Victor Medium Duty Hydrogen, Methane Two Stage Regulator, CGA - 350 | AirGas | VIC0781-3559 | Calibration gas regulator |
| Volumetric flasks, 2 L | Thermo Fisher Scientific, Fisherbrand | FB4002000 | Class A; acid leached and rinsed with deionized water. Used to prepare nutrient spiked seawater. |
| Weigh pans | Thermo Fisher Scientific | 02-202-101 | Polyethylene |
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