Method Article

Using a TMS Navigation System for High-Precision Digitization of Sensor Locations to Improve Source Localization

DOI:

10.3791/69508

January 23rd, 2026

In This Article

Summary

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We present a reproducible method for digitizing high-density electroencephalography (EEG) sensor locations using instruments of a Navigated Brain Stimulation (NBS) system. This approach does not require any additional software extensions, only standard NBS tools. Integrated with MNE-Python pipelines, this approach improves source localization accuracy without additional hardware.

Abstract

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Source localization is a technique used to estimate the sources of brain activity based on signals recorded from the scalp. Accurate source localization critically depends on the precise spatial digitization of sensor locations. In this protocol, we present a practical and reliable method for digitizing sensor locations using the Navigated Brain Stimulation (NBS) system. NBS is a component of Transcranial Magnetic Stimulation (TMS) equipment commonly available in TMS laboratories, but rarely utilized for sensor digitization of electroencephalography (EEG) or functional near-infrared spectroscopy (fNIRS) systems. This approach allows researchers to leverage existing infrastructure to significantly improve the spatial accuracy of source modeling, without investing in dedicated digitization equipment.

We guide viewers through the full workflow: (1) digitizing EEG electrode locations using default tools of the Nexstim NBS system; (2) exporting coordinate data in compatible formats; (3) integrating this data into EEG preprocessing and source localization pipelines using the MNE-Python package. The protocol also includes tips for aligning digitized data with MRI images and optimizing coregistration accuracy. To illustrate the method's practical utility, we apply it to analyze data from a tactile stimulation experiment.

Custom Python scripts for coordinate processing and coregistration are provided to ensure reproducibility and ease of adoption. The results show that incorporating digitized electrode positions remarkably improves the anatomical accuracy and interpretability of cortical source estimates compared to default electrode montages.

Introduction

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Electroencephalography (EEG) measures the brain's electrical activity at the scalp, but the raw recordings mix signals from many brain and non-brain sources. Source localization refers to computationally estimating where in the brain the measured EEG signals originate, effectively "mapping" scalp voltages back to cortical regions1. These methods let researchers link EEG oscillatory activity or event-related responses to specific brain areas, greatly enhancing EEG's interpretability. Achieving accurate source localization critically depends on knowing exactly where each electrode sits on the head relative to the anatomy. We must ....

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Protocol

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All procedures involving human participants were conducted in accordance with institutional guidelines and approved by the relevant ethics committee. Participants provided informed consent prior to the start of the experiment.

1. Preparing the participant and equipment

NOTE: This protocol used the Nexstim NBS system.

  1. Power on and calibrate the NBS system
    1. Turn on the NBS main unit and optical tracking camera. Verify that the system completes self-calibration successfully, and repeat the calibration if any errors are indicated by the software.
  2. Load the participant'....

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Results

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Accurate source localization critically depends on correct electrode placement and reliable coregistration with anatomical head models. In practice, however, EEG caps are often positioned imprecisely due to individual head shape variation or manual placement errors. To illustrate how these factors affect analysis outcomes, we compared results from digitized electrode positions using the NBS device with results obtained from standard template-based electrode layouts. The software and libraries primarily used for the analy.......

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Discussion

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Accurate source localization requires both precise electrode digitization and reliable coregistration with anatomical head models. Our results (Figure 1, Figure 2, and Figure 3) demonstrate how deviations in electrode positioning or reliance on template-based montages can propagate into substantial errors in spatial alignment and source reconstruction. In particular, we showed that digitized electrodes obtained with the Nexstim NBS .......

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Disclosures

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The authors have no competing financial interests or other conflicts of interest pursuant to this work.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Navigated Brain Stimulation (NBS) SystemNexstim https://www.nexstim.com/healthcare-professionals/nbs-systemNBS is transcranial magnetic stimulation combined with a neuronavigation system

References

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  1. Michel, C. M., He, B. EEG source localization. Handb Clin Neurol. 160, 85-101 (2019).
  2. Holmes, C. J., Hoge, R., Collins, L., Woods, R., Toga, A. W., Evans, A. C. Enhancement of MR images using registration for signal averaging. J Comput Assist Tomogr. 22 (2), 324-333 (1998).
  3. F....

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Tags

Source LocalizationSensor DigitizationTMS NavigationEEG Electrode LocationsNavigated Brain StimulationSpatial AccuracyCoregistration AccuracyMNE PythonMRI AlignmentCortical Source Estimates

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