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Method Article

Preparation Of Neovascular Tissues from Human Glioma Tissues for Quantitative Proteomics Analysis of Tumor Angiogenesis

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DOI:

10.3791/69547

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March 20th, 2026

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In This Article

Summary

This protocol successfully prepared sufficient high-quality neovascular tissue from glioma samples using laser-capture microdissection for quantitative proteomics analysis of tumor angiogenesis, overcoming the limitations of studies that traditionally focus mainly on angiogenic factors and providing a large-scale proteomics profile of glioma angiogenesis.

Abstract

Glioma represents primary malignant tumors of the central nervous system with significant incidence and mortality. Tumor angiogenesis is the hallmark of glioma pathophysiology and is an important event in the tumor environment. The aberrant structure of tumor neovascularization serves dual roles: a nutrient supply source and a metastatic portal enabling tumor cell invasion into the bloodstream. Anti-angiogenesis therapy is a hot topic in the field of cancer. Most of the previous studies focus on the activating factors and inhibitory factors of tumor angiogenesis; however, this only clarifies tumor angiogenesis in a very limited range. Abnormal protein expression or post-translational modifications contribute to the abnormal morphology of blood vessels in glioma. This protocol used laser-capture microdissection (LCM) to isolate and purify an adequate amount of neovascular tissues from glioma tissues, which was used for isotope-labelled quantitative proteomics analysis to identify differentially expressed proteins in glioma neovascular tissues compared to controls. These data provide a crucial scientific basis for elucidating the pathological mechanisms of tumor angiogenesis, discovering anti-angiogenic therapeutic targets, and constructing tumor angiogenesis-based biomarkers.

Introduction

Gliomas are highly heterogeneous central nervous system(CNS) tumors originating from glial cells that provide structural and metabolic support to neurons1, and are histologically classified into subtypes: astrocytomas, oligodendrogliomas, and ependymomas2. According to the WHO grading system, glioma grades I and II are the low-grade gliomas (LGG), typically characterized by slow growth rates and potential long-term stability, often amenable to surgical resection based on anatomical location. In contrast, grades III and IV are the high-grade gliomas (HGG), predominantly undifferentiated and malignant with highly invasive ....

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Protocol

This protocol involving human tissue samples was approved by the Medical Ethics Review Committee of Shandong First Medical University (Approval no. R202211090133), and informed consent was obtained from patients and patient’s family. The glioma samples used in this study were all obtained from neurosurgical resected specimens of the neurosurgery department at Xiangya Hospital of Central South University, including 7 cases of astrocytoma grade III tissues. The normal control vessels (n = 3) were taken from microvessels within damaged brain tissue removed due to a cerebral trauma. All patients were first-time attendees without prior radiotherapy or chemotherapy be....

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Results

A sufficient amount of LCM-isolated protein samples was obtained for quantitative proteomics

To obtain reliable proteomic profiles of differentially expressed proteins in glioma neovascular tissues, this study selected the most prevalent glioma subtype, astrocytoma Grade III, and isolated neovascular tissues using LCM due to the availability of enriched neovascular vessels. Moreover, quantitative proteomics requires ≥400 µg protein per sample. This study used LCM technology to.......

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Discussion

LCM combined with isotope-labelling quantitative proteomics identified the first large-scale proteomic profile of glioma angiogenesis

Tumor angiogenesis is a critical pathological hallmark of gliomas, closely associated with their high invasiveness and therapeutic resistance6,7.​​ Traditional anti-angiogenic therapies (such as VEGF inhibitors) show limited clinical efficacy due to target monotony and compen.......

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Disclosures

The authors declare no competing interests.

Acknowledgements

This work was supported by the China National Nature Scientific Funds (81272798 to X.Z., and 82203592 to N.L.), the Shandong Provincial Natural Science Foundation (ZR2022QH112 to N.L.), Shandong Provincial Taishan Scholar Engineering Project Special Funds (NO.tstp20221143 to X.Z.), the China National High-end Foreign Expert Talent Program (H20240743; Foreign Expert: X.Z.), and Shandong First Medical University Scientific Research Cultivation Project in Emerging Strategic Fields (202403).

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
96-Well PlateThermo Fisher Scientific (USA)468667Consumables
AcetoneNanJing Reagent (China)C0720114023Reagent
AcetonitrileMerck (China)CN34892Reagent
BCA Protein Assay KitAbcam (UK)ab102536Reagent
Bovine serum albumin (BSA) standardSolarbio (China)PC0001-1Reagent
centrifuge tube(50ML)Kirgen (China)KG2811Consumables
Cryostat MicrotomeLeica (Germany)C1900Equipment
CysteineAladdin (China)C108238Reagent
DL-Dithiothreitol(DTT)Amresco (USA)D8220Reagent
EASY-Spray C18 Reversed Phase HPLC ColumnThermo Scientific (USA)ES800AConsumables
Electronic BalanceSartorius (USA)BSA224SEquipment
Embedding mediumLeica (Germany)39475237Consumables
Empore SPE Cartridges C18Sigma-Aldrich (USA)66872-UConsumables
Eppendorf TubeKirgen (China)KG2211Consumables
Filter PaperCytiva (USA)Grade42Consumables
Formic acidAladdin (China)F112032Reagent
Glass BeakerSHUBO (China)1015479Consumables
Glass Graduated CylinderSHUBO (China)1601Consumables
‌High-Resolution Liquid Chromatography-Mass SpectrometryThermo Scientific (USA)Q-ExactiveEquipment
Insulated ContainerFhefon (China)LCZYX-12Consumables
Inverted Microscope Leica (Germany)XDS-1Equipment
IodoacetamideSolarbio (China)I8010Reagent
IsopropanolAladdin (China)I112018Reagent
iTRAQ reagentsSigma-Aldrich (USA)4381663Reagent
KClBeyotime (China)ST1596Reagent
KH2PO4ShangHai YuanYe (China)S24278Reagent
Laser-capture microdissectionLeica (Germany)LMD 6000Equipment
Laser-capture microdissection slideLeica (Germany)3800040Consumables
Leica High-Profile Disposable BladesLeica (Germany)14035838926Consumables
Liquid Nitrogen ContainerKEYICRYO (China)YDS-3Equipment
Magnetic Hotplate StirrerShanghaiSILE (China)LAB-0002-0068-SHSLEquipment
Microplate ReaderTECAN (Switzerland)INFNITE F200Equipment
PEN MembraneLeica (Germany)11505189Consumables
PH meterSartorius (USA)PB-10Equipment
PipetteEppendorf (Germany)3123000268Equipment
PipetteEppendorf (Germany)3123000241Equipment
PipetteEppendorf (Germany)3123000225Equipment
PolySULFOETHYL APolyLC Inc (USA)104SE0303Consumables
Protease inhibitorRoche (Switzerland)05892791001Reagent
Refrigerated centrifugeBeckman (USA)AllegraTM X-22REquipment
RefrigeratorMEILING (China)BCD-180KCTEquipment
Sodium dodecyl sulfate (SDS)Amresco (USA)1027P033Reagent
Staining JarBeyotime (China)FG005Consumables
Stainless Steel ScoopMuzixing (China)XYS-101Consumables
TipsKirgen (China)KG1313Consumables
Toluidine blue staining solutionSigma-Aldrich (USA)198161-5G/198161-25GReagent
Trifluoroacetic acidAladdin (China)T103293Reagent
Tris-HClAmresco (USA)T8230Reagent
Trypsin-EDTA solutionSolarbio (China)T1300Reagent
Ultra-Low Temperature FreezerSanyo (Japan)MDF-382EEquipment
Ultra-pure Water PurifierELGA (UK)PureLAB flexEquipment
Ultrasonic Cell DisruptorQSONICA (USA)Q500Equipment
Vacuum freeze dryerThermo (USA)SNL 315SVEquipment
Vortex mixerCrystal Technology & Industries (USA)HYQ-3110Equipment
Water bath incubatorShanghai Yiheng Technology Instrument (China)HWS-26Equipment
Weighing PaperCole-parmer (USA)133802Consumables

References

  1. Lapointe, S., Perry, A., Butowski, N. A. Primary brain tumours in adults. Lancet. 392 (10145), 432-446 (2018).
  2. Pienkowski, T., et al. Proteomic profiling reveals dynamic regulation of vesicle trafficking across glioma grades. J Neurooncol. 175 (2), 585-598 (2025)....

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