Here, we present a protocol for retrieving, validating, and analyzing Web of Science Core Collection records on Caenorhabditis elegans and aging using CiteSpace, VOSviewer, Bibliometrix, and Scimago Graphica for reproducible bibliometric mapping.
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Method Article
* These authors contributed equally
Here, we present a protocol for retrieving, validating, and analyzing Web of Science Core Collection records on Caenorhabditis elegans and aging using CiteSpace, VOSviewer, Bibliometrix, and Scimago Graphica for reproducible bibliometric mapping.
Aging is a complex biological phenomenon characterized by the progressive deterioration of physiological functions and increased vulnerability to age-associated diseases. At the cellular level, this process is exemplified by senescence, in which cells experience an irreversible halt in division and enter a state of permanent growth arrest, without progressing to apoptosis. However, the underlying mechanisms remain incompletely understood. The nematode Caenorhabditis elegans (C. elegans), with a short lifespan and well-characterized genetics, is a powerful model for deciphering the molecular basis of aging. Nevertheless, a comprehensive bibliometric mapping of research at the intersection of C. elegans and aging is still lacking. Here, we present a protocol to retrieve records from the Web of Science Core Collection, perform data processing, and conduct reproducible bibliometric visualization using CiteSpace, Bibliometrix (R), VOSviewer, and Pajek, aiming to map the knowledge structure and identify emerging trends in C. elegans aging research. Using 6,117 articles published from 1970 through June 5, 2025, we analyzed country and institutional contributions, authorship, journal impact, citation patterns, and thematic evolution. The dataset comprised 6,117 records from 19,864 authors across 3,798 institutes in 91 countries. Annual publications increased from 312 in 2020 to 341 in 2021 and remained high thereafter. The United States led global output, followed by China, Germany, and the United Kingdom, with collaboration networks concentrated among these countries. The University of California system ranked first in productivity, while the Chinese Academy of Sciences ranked third. Topic evolution indicated a shift from foundational studies of insulin/insulin-like growth factor 1 signaling (IIS) pathways and stress responses toward emerging themes such as thermal control and mitophagy in C. elegans aging models. Overall, this protocol enables transparent, updatable bibliometric analyses and supports future studies of key directions, including caloric restriction and mitophagy.
Aging is a multifaceted biological process that refers to the loss of the proliferative capacity of normal somatic cells after a limited number of divisions. During the aging process, the physiological functions of the organism gradually decline, and susceptibility to age-related diseases increases1. At the cellular level, this process manifests as DNA damage, such as the accumulation of double-strand breaks and oxidative damage, and these damages exceed the handling capacity of the repair mechanisms. These cellular-level changes are reflected at the organismal level as the gradual deterioration of physiological functions. Furthermore, some stu....
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This study does not refer to ethical approval and consent to participate. The data used in this study were obtained from the Web of Science Core Collection (WoSCC).
1. Database selection
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Overview of trends and evolution of C. elegans in the aging area
The bibliometric analysis included 6,117 publication records from 1,123 sources, selected from an initial 6,205 publications from WOSCC that met eligibility criteria. This included 45 early-access reviews and 145 proceedings papers. After excluding 87 irrelevant and one retracted publication, the data were analyzed for temporal distribution and document types. Over the past five decades, 4,949 articles (80.90%) and 1,168 review.......
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To ensure reproducibility and interpretability, key steps in this workflow include: thoroughly reporting the retrieval strategy (database source, query, document types, language limits, retrieval date), conducting relevance screening and data validation to minimize off-topic records, consistently reporting tool parameters (time slicing, node types, pruning, thresholds, clustering), and exporting outputs in standard formats while documenting software versions for transparency and future updates. This protocol can be adjus.......
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The authors have nothing to disclose.
The authors wish to express their appreciation to all the participants and researchers who contributed to this work. Furthermore, they are grateful for the analytical tools provided by CiteSpace, VOSviewer, Scimago Graphica, and R, which were instrumental in conducting this research.
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| LEGION Savior Y7000 2019 laptop (SerialNumber PF1CGZJU) | Lenovo | https://pcsupport.lenovo.com/us/en/products/laptops-and-netbooks/legion-series/legion-y7000-2019 | Computer used for analyses |
| R (version 4.5.2) | R Foundation for Statistical Computing / R Core Team | https://www.r-project.org/ | Statistical computing environment |
| CiteSpace (version 6.3.R3) | CiteSpace / Chaomei Chen (Drexel University) | https://citespace.podia.com/ | Bibliometric visualization and analysis software |
| VOSviewer (version 1.6.20) | Leiden University CWTS (Nees Jan van Eck, Ludo Waltman) | https://www.vosviewer.com/ | Bibliometric mapping software |
| Pajek (version 64.6.01) | University of Ljubljana (Vladimir Batagelj, Andrej Mrvar) | http://mrvar.fdv.uni-lj.si/pajek/ | Network analysis and visualization software |
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