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Method Article

Isolation and Culture of Mouse Brain Microvascular Endothelial Cells

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DOI:

10.3791/70909

July 17th, 2026

In This Article

Summary

A protocol is presented for the isolation and primary culture of brain microvascular endothelial cells (BMECs) from neonatal murine brain tissue to generate a robust in vitro model for studying blood-brain barrier function under physiological and pathological conditions.

Abstract

Brain microvascular endothelial cells (BMECs) are the main cellular component of the blood-brain barrier (BBB) and play a key role in regulating molecular transport and maintaining central nervous system homeostasis. Reliable in vitro models of brain endothelium are essential for studying BBB physiology and dysfunction in neurological and systemic diseases. A reproducible protocol for the isolation and primary culture of BMECs from neonatal murine cerebral cortex is described. The method includes cortical tissue dissection, mechanical and enzymatic dissociation, removal of myelin debris using a bovine serum albumin (BSA) density gradient, and enrichment of endothelial cells using CD31-based immunoselection. Isolated cells are subsequently cultured on collagen-coated plates and characterized by morphological assessment, immunofluorescence detection of endothelial markers, angiogenic tube formation assays, and transendothelial electrical resistance (TEER) measurements to evaluate barrier properties. This protocol provides a reliable approach for obtaining primary BMEC cultures suitable for investigating BBB biology, endothelial signaling, and neurovascular interactions under physiological and pathological conditions.

Introduction

The blood-brain barrier (BBB) is a highly specialized structure that strictly regulates the exchange of substances between the central nervous system (CNS) and the systemic circulation1. The BBB is primarily formed by brain microvascular endothelial cells connected by tight junctions. These endothelial cells function within a multicellular system known as the neurovascular unit (NVU), which also includes astrocytes, pericytes, neurons, glial cells, and the basement membrane2. Among these components, brain microvascular endothelial cells (BMECs) play a central role by forming a continuous layer with tight junctions, thous....

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Protocol

The Bioethics and Biosafety Committee of the University of Bío-Bío approved this project (Fondecyt grant 1240925). The work with animals was carried out in accordance with the cardinal principles of the three R's in the use of experimental animals13 and in accordance with the recommendations of the Guidelines for the Care and Use of Laboratory Animals published by the National Institutes of Health of the United States14. The animals were kept in appropriate environments at the Bioterium of the University of Bío-Bío under standard housing conditions (12 h light/dark cycle, controlled temperature of....

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Results

The protocol described here enables the isolation and culture of primary BMECs from neonatal mice (P5). These cells are the main cellular component of the BBB and are therefore a valuable experimental tool for studying cerebrovascular physiology and pathophysiology. Successful isolation and culture of brain microvascular endothelial cells (BMECs) were demonstrated through morphological, phenotypic, and functional assessments.

The isolation workflow resulted in a cell suspension derived from di.......

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Discussion

The isolation of BMECs is an instrumental tool for studying the mechanisms that regulate the physiology of the BBB and its dysfunction in various central nervous system (CNS) pathologies4,9, including stroke. Unlike immortalized cell lines, primary BMEC cultures preserve key phenotypic and functional features of the brain endothelium, including the expression of tightly bound proteins, and an angiogenic capacity representative of the in vivo. context

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Disclosures

The authors have no conflicts of interest to declare.

Portions of this manuscript were written with OpenAI's ChatGPT (GPT-4, July 2025 version) to improve clarity, language, and coherence. The authors critically reviewed, edited, and approved all AI-assisted content. No AI tools were used for data analysis, result interpretation, or the generation of scientific conclusions.

Acknowledgements

The authors would like to thank the researchers belonging to GRIVAS Health and NEUROVAS for their valuable input. This study was funded by Fondecyt Regular 1240295.

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
60 mm culture platesCorning430166
96 Well culture platesCorning41122107
Acetic acidSigma-AldrichA6283
Antibiotic-Antimycotic (optional)Gibco15240062
Anti-CD31Santa Cruz sc-466941:100
Anti-GFAPThermo Fisher Scientific13-03001:500
Anti-GLUT1Abcamab1157301:200
Anti-Iba1Santa Cruzsc-327251:500
Anti-mouse IgG Alexa Fluor (594 Dye)Thermo Fisher ScientificA-110051:500
Anti-rabbit IgG Alexa Fluor  (488 Dye)Thermo Fisher ScientificA-110081:500
Automatic and serological pipettes Oxford LP  OXL.OXL.OSP-5C
Basal medium (for collagen solution)Gibco (DMEM)11965092
Bovine Serum Albumin (BSA)Sigma-AldrichA9647
Collagenase type IISigma-AldrichC6885
DAPIThermo Fisher Scientific622481 µg/mL
DMEM (high glucose)Thermo Fisher Scientific11965092
EndoGRO-MV Complete MediumMerck MilliporeSCME004Endothelial cell growth medium
Falcon tubes (15 & 50 mL)Corning®352096 / 352070
Fetal Bovine Serum (FBS)Gibco (Thermo Fisher)16000044
Fluorescence MicroscopeMoticBA410
Gloves, masks, lab consumablesVarious suppliers
Heparin (100 U/mL)Sigma-AldrichH3393
Inverted MicroscopeOlympus CKX41
Magnetic separation magnetEasySep  NC9284020
Orbital Shaker (37 °C)Thermo Fisher ScientificSK-0180-S
ParafilmBemisPM996
PBS (1×)Thermo Fisher Scientific10010023
Refrigerated CentrifugeHITACHICT5RE
ScalpelFine Science ToolsVarious
Scissors and fine tweezersFine Science ToolsVarious
Sterile nitrocellulose membraneBIO-RAD1620094
Type I collagenCorning 30394

References

  1. Kadry, H., Noorani, B., Cucullo, L. A blood-brain barrier overview on structure, function, impairment, and biomarkers of integrity. Fluids Barriers CNS. , (2020).
  2. Abbott, N. J., Rönnbäck, L., Hansson, E. Astrocyte-endothelial interactions at the blood-brain barr....

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Tags

Blood Brain BarrierEndothelial Cell IsolationPrimary Cell CultureCortical Tissue DissectionEnzymatic DissociationBSA Density GradientCD31 ImmunoselectionImmunofluorescence DetectionTransendothelial Electrical Resistance

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