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High-Throughput Automation Methods for Cell and Protein Upstream Development

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Samuel Oliveira

Samuel Oliveira

Boston University, Electrical and Computer Engineering Department

Dr. Samuel Oliveira is a Postdoc at Prof. Doug Densmore’s lab and the Manager of the DNA Bio-foundry of Boston University. Samuel has a background in Bioengineering, Microfluidics, Microscopy, and Lab Automation. Samuel is focused on automating the design and fabrication of multi-layer, very large-scale integrated (VLSI) microfluidic devices that enable the dynamic studies of microbial communities and the screening of novel cell-based biosensors. He is particularly interested in deploying reprogrammed microbes embedded into deployable microfluidic devices as bioremediation solutions to detect and monitor microbial diseases in soil and water-based environments. He is also the Senior Manager of the DAMP lab (damplab.org), a Microfluidics fabrication space, leading the development of hardware and software workflows for off-the-shelf services and corporate-sponsored projects. He is primarily focused on developing automation platforms to increase the throughput and reproducibility of experimental protocols, e.g., the engineering of genetic constructs and novel microbial communities.

Collection Overview

Forthcoming biotherapeutics and biotechnologies require sophisticated upstream process development to identify the suitable genetic and protein variation, cell line and strains, culture media, and their combinations for, e.g., industrial bioreactor applications. Improvements in lab automation, DNA synthesis, and Synthetic Biology have accelerated upstream process development. Microfluidics and lab automation have enabled the quick design, construction, and testing of multiple biomaterial candidates and production conditions. In addition, advances in machine learning and other computation approaches use upstream data sets to drive process decision-making and cross-program learning. In this data collection, the first aim is to exchange automation hardware and computational data, techniques, and workflows that can boost upstream throughput processes of gene discovery and development. Such procedures are expected to increase discovery operations' quality, resilience, dependability, and reproducibility. Next, it focuses on sharing innovative, high-throughput microfluidics platforms for data collection and storage of biomaterials. Lastly, it aims to cover AI breakthroughs for accurate property landscape sampling, analytical characterization, and rational design of biomaterials and their functions.

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Superior Auto-Identification of Trypanosome Parasites by Using a Hybrid Deep-Learning Model
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Superior Auto-Identification of Trypanosome Parasites by Using a Hybrid Deep-Learning Model

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Cited by 7

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2023

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