Computational Data Processing

Computational data processing is the use of algorithms and computer systems to organize, transform, analyze, and interpret large or complex datasets, making it essential for converting experimental measurements into usable biochemical knowledge. In biochemistry, workflows typically import raw sequence, structural, or assay data, apply quality control and normalization, and use statistical analysis, pattern recognition, or machine-learning models to identify relationships while reducing noise and managing missing values. These approaches support genomics, proteomics, metabolomics, enzyme studies, and systems biology by revealing molecular interactions, pathway changes, and disease-associated signatures, while improving reproducibility and enabling researchers to integrate results from diverse experiments.

Computational Data Processing - Related Videos

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JoVE Journal - Biology
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3D Printing of Preclinical X-ray Computed Tomographic Data Sets

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Cited by 16 •

2013

Using modern plastic extrusion and printing technologies, it is now possible to quickly and inexpensively produce physical models of X-ray CT data taken in a laboratory. The three -dimensional printing of tomographic data is a powerful visualization, research, and educational tool that may now be accessed by the preclinical imaging community.

Research

JoVE Journal - Biology

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools

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2025

Mass spectrometry-based proteomic data is available in open databases and accessible using free tools. Given the complexity of database searches and descriptions, many biologists lack the knowledge to utilize these datasets. Here, we provide a guide on using free tools for basic proteomic data searches.

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JoVE Journal - Environment
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Collecting and Processing Drone-based Remotely Sensed Data for Use in Forest Recovery Monitoring

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Cited by 1 •

2025

Recent advancements in remotely piloted aircraft systems (RPAS) allow sub-meter resolution, ideal for forest recovery monitoring. Integrating artificial intelligence (AI) enables deeper insights from large remotely sensed datasets. This protocol improves monitoring by supporting more efficient assessment and management of forested lands recovering from disturbance.

Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

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Cited by 2 •

2016

A methodology for obtaining visual and quantitative root structure information from X-ray computed tomography data acquired in-soil is presented.

How to Measure Cortical Folding from MR Images: a Step-by-Step Tutorial to Compute Local Gyrification Index

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Cited by 168 •

2012

Measuring gyrification (cortical folding) at any age represents a window into early brain development. Hence, we previously developed an algorithm to measure local gyrification at thousands of points over the hemisphere1. In this paper, we detail the computation of this local gyrification index.

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