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Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

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Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

DOI:

10.3791/53788-v

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09:37 min

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April 26, 2016

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Niraj Suresh, Sean A. Stephens, Lexor Adams, Anthon N. Beck, Adriana L. McKinney, Tamas Varga

¹Environmental Molecular Sciences Laboratory

Chapters

00:05Title
00:52Root Imaging
02:27Data Reconstruction
03:21Data Processing/Segmentation
05:11Volume and Surface Analysis
06:35Results: X-ray Computed Tomography Data Volume and Surface Analysis of a Three-dimensional Root System
08:12Conclusion

Summary

Automatic Translation

A methodology for obtaining visual and quantitative root structure information from X-ray computed tomography data acquired in-soil is presented.

Tags

Keywords: 3D Root System X-ray Computed Tomography Root Structure Non-invasive Imaging Tomographic Imaging Data Reconstruction Volume And Surface Analysis Plant Response Environmental Conditions Shading Correction Data Acquisition Center Of Rotation

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