Downstream Processing

Downstream processing is the series of operations used to recover, purify, and prepare a desired product after its initial synthesis or production, making it essential for converting a complex process stream into a usable material. In bioprocess and chemical engineering, it typically combines clarification, cell or solid removal, concentration, separation, purification, and formulation, using differences in size, density, charge, solubility, or affinity. Engineers select and integrate methods such as filtration, centrifugation, extraction, precipitation, chromatography, and drying to protect product quality while controlling cost and throughput. Effective downstream processing improves yield, purity, stability, and scalability in pharmaceuticals, food ingredients, industrial enzymes, and other manufactured products.

Downstream Processing - Related Videos

Education

JoVE Core - Microbiology

Downstream Processing

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2026

Downstream processing begins once fermentation is complete and involves a series of steps to recover and purify products such as acids, vitamins, antibiotics, or proteins.Cell HarvestingFor example, for intracellular protein-based products, the first step is harvesting the cells. This is typically achieved using centrifugation or filtration to separate the cells from the liquid phase.Cell Disruption for Intracellular ProductsIf the target product is intracellular, the harvested cells must be...

Research

JoVE EoE - Neuropathology

Processing of a Mouse Brain for Downstream Analysis

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2025

This video demonstrates a detailed step-by-step protocol for preparing frozen mouse brain tissue sections for downstream analyses.

Automating Citrus Budwood Processing for Downstream Pathogen Detection Through Instrument Engineering

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2023

We engineered, fabricated, and validated an instrument that rapidly processes phloem-rich bark citrus budwood tissues. Compared to current methods, the budwood tissue extractor (BTE) has increased sample throughput and decreased the required labor and equipment costs.

A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids

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Cited by 81 •

2015

In this video protocol we give a step by step explanation of lentiviral transduction in organoids of primary intestinal epithelium and of processing and downstream analysis of these cultures by quantitative RT-PCR, RNA-microarray and immunohistochemistry.

Research

JoVE Journal - Biology
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Dissection and Downstream Analysis of Zebra Finch Embryos at Early Stages of Development

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Cited by 2 •

2014

The zebra finch (Taeniopygiaguttata) is a valuable model organism; however, early stages of zebra finch development have not been extensively studied. The protocol describes how to dissect early embryos for developmental and molecular applications.

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