Segmentation Dataset

A segmentation dataset is a curated collection of medical images paired with annotations that identify the boundaries or regions of clinically relevant structures, such as organs, lesions, or tissues. In each image, experts or established annotation protocols assign labels to pixels or three-dimensional voxels, creating ground truth for training and evaluating algorithms that separate one structure from another. These datasets support computer vision research in radiology, pathology, and other areas of medicine by enabling automated image analysis, measurement, and disease characterization. Their quality, diversity, and annotation consistency strongly influence model accuracy, reproducibility, and clinical usefulness.

Segmentation Dataset - Related Videos

Research

JoVE Journal - Biology
Free Sample

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

0 Views •

Cited by 10 •

2017

Segmentation of three-dimensional data from many imaging techniques is a major bottleneck in analysis of complex biological systems. Here, we describe the use of SuRVoS Workbench to semi-automatically segment volumetric data at various length-scales using example datasets from cryo-electron tomography, cryo soft X-ray tomography, and phase contrast X-ray tomography techniques.

Research

JoVE Journal - Biology

A User-friendly and Powerful R Analysis of Large-scale Datasets

0 Views •

2025

This report describes a method involving an R script in the open-source software RStudio to analyze large-scale datasets obtained from time series experiments.

Research

JoVE Journal - Biology
Free Sample

Mining Spatial Transcriptomics Datasets using DeepSpaceDB

0 Views •

2025

This article introduces a protocol for using DeepSpaceDB, a dynamic, interactive database for spatial transcriptomics, offering analysis workflows and examples to explore tissue organization and disease-related gene expression.

Research

JoVE Journal - Biology
Free Sample

Automated Joint Space Detection Improves Bone Segmentation Accuracy

0 Views •

2025

The development of an automated joint space detection workflow enabled high-throughput segmentation of distinct murine hindpaw bones with >98% accuracy in wild-type animals. Flexible application to forepaws and paws with inflammatory-erosive arthritis was achieved, but with deprecated performance that warrants further optimization in future studies using publicly available data.

Research

JoVE Journal - Medicine
Free Sample

Segmentation and Measurement of Fat Volumes in Murine Obesity Models Using X-ray Computed Tomography

0 Views •

Cited by 26 •

2012

Fat content analysis is routinely conducted in studies utilizing murine obesity models. Emerging methods in small animal CT imaging and analysis are providing for longitudinal detail rich fat content analysis. Here we detail step by step procedures for performing small animal CT imaging, analysis, and visualization.

View All Results

FAQs

Related Topics