Gut-derived Metabolites

Gut-derived metabolites are small molecules produced or modified in the gastrointestinal tract by host cells, diet, and resident microbes, and they provide chemical signals linking intestinal physiology with the nervous system. These compounds, including short-chain fatty acids, bile acid derivatives, and tryptophan metabolites, can enter circulation or activate intestinal, immune, and neural pathways; their effects depend on concentration, receptor engagement, barrier permeability, and microbial metabolism. In neuroscience, studying these signals helps clarify how the gut microbiome influences neuroinflammation, brain development, stress responses, and neurological disease, while supporting research into biomarkers and microbiome-targeted interventions.

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JoVE EoE - Neurotherapeutics

Intracranial Injection of Gut-Derived Microbial Metabolites in a Mouse Model

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2025

Source: Liou, C. et al. Intracerebroventricular Delivery of Gut-Derived Microbial Metabolites in Freely Moving Mice. J. Vis. Exp. (2022).This video demonstrates the intracranial injection of short-chain fatty acids (SCFAs) in a freely moving mouse to study their effects on brain-mediated behavior. An injector cannula is inserted into a guide cannula implanted in the mouse brain. After recovery, the mouse acclimates in a novel cage. SCFAs are then administered, and locomotor behavior is recorded.

Intracerebroventricular Delivery of Gut-Derived Microbial Metabolites in Freely Moving Mice

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Cited by 4 •

2022

Gut-derived microbial metabolites have multifaceted effects leading to complex behavior in animals. We aim to provide a step-by-step method to delineate the effects of gut-derived microbial metabolites in the brain via intracerebroventricular delivery via a guide cannula.

Detection of Human Fecal Metabolites Using a Bacterial Biosensor

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2026

Begin with a bacterial biosensor culture suspended in a medium.These engineered bacteria produce a transcription factor that, upon binding to a specific fecal metabolite, activates a promoter associated with a fluorescent reporter gene.To this culture, add a filtered human fecal sample containing metabolites, such as lactate, that are involved in host-microbiome interactions.Dilute this mixture with a fresh medium to maintain an optimal reaction volume.Incubate without shaking to mimic the...

Investigating the Human Gut Microbial Activity on Exopolysaccharides

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2026

Source: Hu, Y. et.al., Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems. J. Vis. Exp. (2019)This video demonstrates the analysis of short-chain fatty acid production by human gut microbiota in response to exopolysaccharides. This highlights microbial fermentation products separation and quantification using gas chromatography. The results reveal that exopolysaccharides modulate microbial metabolites that influence host-pathogen...

Assessing the Role of Gut Microbiota in Modulating Hepatitis B Infection in Mice

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2026

Take a control mouse with a normal gut microbiota and an experimental mouse with depleted gut microbiota. The depletion compromises the integrity of the gut barrier.This enables bacteria to translocate through the blood vessel into the liver tissue.Inject both mice with the hepatitis B virus or HBV plasmid to induce an HBV infection in the liver tissue.In the control mouse, the T cell detects an infected liver cell through the interaction of its receptors with viral antigens, and produces...

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