-1::1
Simple Hit Counter
Skip to content

Products

Solutions

×
×
Sign In

TR

EN - EnglishCN - 简体中文DE - DeutschES - EspañolKR - 한국어IT - ItalianoFR - FrançaisPT - Português do BrasilPL - PolskiHE - עִבְרִיתRU - РусскийJA - 日本語TR - TürkçeAR - العربية
Sign In Start Free Trial

RESEARCH

JoVE Journal

Peer reviewed scientific video journal

Behavior
Biochemistry
Bioengineering
Biology
Cancer Research
Chemistry
Developmental Biology
View All
JoVE Encyclopedia of Experiments

Video encyclopedia of advanced research methods

Biological Techniques
Biology
Cancer Research
Immunology
Neuroscience
Microbiology
JoVE Visualize

Visualizing science through experiment videos

EDUCATION

JoVE Core

Video textbooks for undergraduate courses

Analytical Chemistry
Anatomy and Physiology
Biology
Calculus
Cell Biology
Chemistry
Civil Engineering
Electrical Engineering
View All
JoVE Science Education

Visual demonstrations of key scientific experiments

Advanced Biology
Basic Biology
Chemistry
View All
JoVE Lab Manual

Videos of experiments for undergraduate lab courses

Biology
Chemistry

BUSINESS

JoVE Business

Video textbooks for business education

Accounting
Finance
Macroeconomics
Marketing
Microeconomics

OTHERS

JoVE Quiz

Interactive video based quizzes for formative assessments

Authors

Teaching Faculty

Librarians

K12 Schools

Biopharma

Products

RESEARCH

JoVE Journal

Peer reviewed scientific video journal

JoVE Encyclopedia of Experiments

Video encyclopedia of advanced research methods

JoVE Visualize

Visualizing science through experiment videos

EDUCATION

JoVE Core

Video textbooks for undergraduates

JoVE Science Education

Visual demonstrations of key scientific experiments

JoVE Lab Manual

Videos of experiments for undergraduate lab courses

BUSINESS

JoVE Business

Video textbooks for business education

OTHERS

JoVE Quiz

Interactive video based quizzes for formative assessments

Solutions

Authors
Teaching Faculty
Librarians
K12 Schools
Biopharma

Language

tr_TR

EN

English

CN

简体中文

DE

Deutsch

ES

Español

KR

한국어

IT

Italiano

FR

Français

PT

Português do Brasil

PL

Polski

HE

עִבְרִית

RU

Русский

JA

日本語

TR

Türkçe

AR

العربية

    Menu

    JoVE Journal

    Behavior

    Biochemistry

    Bioengineering

    Biology

    Cancer Research

    Chemistry

    Developmental Biology

    Engineering

    Environment

    Genetics

    Immunology and Infection

    Medicine

    Neuroscience

    Menu

    JoVE Encyclopedia of Experiments

    Biological Techniques

    Biology

    Cancer Research

    Immunology

    Neuroscience

    Microbiology

    Menu

    JoVE Core

    Analytical Chemistry

    Anatomy and Physiology

    Biology

    Calculus

    Cell Biology

    Chemistry

    Civil Engineering

    Electrical Engineering

    Introduction to Psychology

    Mechanical Engineering

    Medical-Surgical Nursing

    View All

    Menu

    JoVE Science Education

    Advanced Biology

    Basic Biology

    Chemistry

    Clinical Skills

    Engineering

    Environmental Sciences

    Physics

    Psychology

    View All

    Menu

    JoVE Lab Manual

    Biology

    Chemistry

    Menu

    JoVE Business

    Accounting

    Finance

    Macroeconomics

    Marketing

    Microeconomics

Start Free Trial
Loading...
Home
JoVE Journal
Neuroscience
Beyin MRG Kullanılarak İnsan Koroid Pleksusunun Manuel Segmentasyonu
Beyin MRG Kullanılarak İnsan Koroid Pleksusunun Manuel Segmentasyonu
JoVE Journal
Neuroscience
A subscription to JoVE is required to view this content.  Sign in or start your free trial.
JoVE Journal Neuroscience
Manual Segmentation of the Human Choroid Plexus Using Brain MRI

Beyin MRG Kullanılarak İnsan Koroid Pleksusunun Manuel Segmentasyonu

Full Text
3,864 Views
04:25 min
December 15, 2023

DOI: 10.3791/65341-v

Deepthi Bannai*1,2, Yuan Cao*3,4, Matcheri Keshavan1,2, Martin Reuter5,6,7, Paulo Lizano1,2,8

1Department of Psychiatry,Beth Israel Deaconess Medical Center, 2Division of Translational Neuroscience,Beth Israel Deaconess Medical Center, 3Huaxi MR Research Center (HMRRC), Department of Radiology,West China Hospital of Sichuan University, 4Department of Psychiatry and Psychotherapy,Jena University Hospital, 5AI in Medical Imaging,German Center for Neurodegenerative Diseases (DZNE), 6A. A. Martinos Center for Biomedical Imaging,Massachusetts General Hospital, 7Department of Radiology,Harvard Medical School, 8Department of Psychiatry,Harvard Medical School

AI Banner

Please note that some of the translations on this page are AI generated. Click here for the English version.

Overview

This article presents a standardized protocol for the manual segmentation of the choroid plexus within the lateral third and fourth ventricles of the brain. The need for this protocol arises from the complexity of the choroid plexus's location and the scarcity of reliable automated segmentation tools in neuroimaging studies. The protocol aims to produce a dataset to train algorithms for accurate automatic segmentation, which is crucial for future studies on neurologic and neuropsychiatric disorders.

Key Study Components

Area of Science

  • Neuroimaging
  • Neuroanatomy
  • Segmenting protocols

Background

  • The choroid plexus plays a critical role in brain function.
  • Automated segmentation tools for this structure are lacking.
  • Manual segmentation can address the challenges faced in identifying this complex structure.
  • A reliable protocol could significantly enhance neuroimaging studies.

Purpose of Study

  • To develop a standardized method for manual segmentation of the choroid plexus.
  • To clarify common issues encountered in the segmentation process.
  • To create a comprehensive dataset for future algorithm training.

Methods Used

  • The study utilized DICOM data for imaging tasks.
  • A manual segmentation approach was implemented, focusing on the lateral, third, and fourth ventricles.
  • Key steps include adjusting image brightness and contrast, selecting segments, and renaming them for clarity.
  • Segmentation involved using reference anatomical landmarks for accurate placement.
  • Quantification of the choroid plexus volume was performed using the Segment Statistics module.

Main Results

  • The protocol facilitated effective manual segmentation of the choroid plexus within specified regions.
  • Detailed steps ensured consistent results across variations in imaging.
  • The output included quantification tables of the choroid plexus volume.
  • The method is poised to improve future neuroimaging studies investigating choroid plexus functions.

Conclusions

  • This study provides a comprehensive framework for manually segmenting the choroid plexus in neuroimaging.
  • By generating a robust dataset, it lays the groundwork for the development of automated segmentation algorithms.
  • The implications extend to enhancing the understanding of the role of the choroid plexus in neurological disorders.

Frequently Asked Questions

What are the advantages of the manual segmentation protocol?
The manual segmentation protocol allows researchers to accurately identify the choroid plexus, which is crucial given its complex location in the brain. This accuracy can lead to better data integrity in neuroimaging studies.
How does the protocol address common segmentation challenges?
The protocol provides step-by-step guidance on adjusting image parameters and selecting appropriate landmarks, which helps mitigate common issues related to visibility and segmentation accuracy.
What types of data are generated from this segmentation protocol?
The protocol generates segmentation maps and quantification tables that contain volumetric measurements of the choroid plexus, which are essential for further analysis in neuroimaging studies.
Can this method be adapted for use with automated segmentation tools?
Yes, the manual segmentation dataset can be used to train automated tools, thereby facilitating the transition from manual to automated processes in future studies.
What are the key considerations when implementing this method?
Researchers should ensure consistent image quality and familiarity with anatomical landmarks to achieve accurate segmentation. Proper software usage is also vital for successful implementation.

Koroid pleksusun beyindeki önemli rolüne rağmen, güvenilir otomatik segmentasyon araçlarının olmaması nedeniyle bu yapının nörogörüntüleme çalışmaları azdır. Mevcut protokol, gelecekteki nörogörüntüleme çalışmalarını bilgilendirebilecek koroid pleksusun altın standart manuel segmentasyonunu sağlamayı amaçlamaktadır.

Koroid pleksusu beynin lateral üçüncü ve dördüncü ventrikülleri içinde manuel olarak bölümlere ayırmak için erişilebilir ve standartlaştırılmış bir protokol oluşturmayı amaçlıyoruz. Koroid pleksusu manuel olarak bölümlere ayırırken ortaya çıkabilecek yaygın soruları veya sorunları, özellikle de beyindeki konumunun karmaşık doğasını göz önünde bulundurarak ele almayı umuyoruz. Bu protokolün geliştirilmesi, daha sonra koroid pleksusu doğru ve otomatik olarak segmentlere ayırabilen algoritmaları eğitmek ve geliştirmek için kullanabileceğimiz temel gerçek segmentasyon haritalarından oluşan yeterince büyük bir veri setinin oluşturulmasına yol açacaktır.

Gelecekte, bu, çeşitli nörolojik ve nöropsikiyatrik bozukluklarda koroid pleksusun rolünü araştıran çalışmalara yol açacaktır.

View the full transcript and gain access to thousands of scientific videos

Sign In Start Free Trial

Explore More Videos

JoVE'de Bu Ay Sayı 202 Koroid pleksus MRI manuel segmentasyon insan hacim nörogörüntüleme

Related Videos

İnsan orta beyin için yüksek çözünürlüklü Fonksiyonel Manyetik Rezonans Görüntüleme Yöntemleri

10:06

İnsan orta beyin için yüksek çözünürlüklü Fonksiyonel Manyetik Rezonans Görüntüleme Yöntemleri

Related Videos

13.5K Views

Beyin BT Görüntüleri dayalı otomatik Midline Shift ve İntrakraniyal Basınç Tahmini

14:08

Beyin BT Görüntüleri dayalı otomatik Midline Shift ve İntrakraniyal Basınç Tahmini

Related Videos

43.6K Views

Medial Temporal Lob Yapıların El segmentasyonu için Kapsamlı Protokolü

12:30

Medial Temporal Lob Yapıların El segmentasyonu için Kapsamlı Protokolü

Related Videos

20.9K Views

Bütün beyin segmentasyon ve değişim noktası analizi anatomik beyin MR'ı — uygulama Premanifest Huntington hastalığı

09:06

Bütün beyin segmentasyon ve değişim noktası analizi anatomik beyin MR'ı — uygulama Premanifest Huntington hastalığı

Related Videos

12.7K Views

Kortikal gri cevherde T1 ağırlıklı MRG görüntülerden otomatik bölümleme

06:48

Kortikal gri cevherde T1 ağırlıklı MRG görüntülerden otomatik bölümleme

Related Videos

9.5K Views

Sigara İnsan Primatlar Manuel Beceri Davranış Değerlendirme

16:00

Sigara İnsan Primatlar Manuel Beceri Davranış Değerlendirme

Related Videos

23.1K Views

Ultrasonik Kan-beyin bariyeri bozulması ve Manganez kontrastlı MRG kullanma İşlevsel beyin görüntüleme

08:36

Ultrasonik Kan-beyin bariyeri bozulması ve Manganez kontrastlı MRG kullanma İşlevsel beyin görüntüleme

Related Videos

15.5K Views

Zebra balığı Embriyonik Beyin Ventrikül Manuel Drenaj

06:17

Zebra balığı Embriyonik Beyin Ventrikül Manuel Drenaj

Related Videos

10.5K Views

Rat Beyin gelen Serebral Yüzey damarları ve İlişkili Beyin zarları ve Diseksiyon ve Koroid Pleksus bir Görsel Açıklama

12:31

Rat Beyin gelen Serebral Yüzey damarları ve İlişkili Beyin zarları ve Diseksiyon ve Koroid Pleksus bir Görsel Açıklama

Related Videos

50K Views

Yüksek çözünürlük İn Vivo 3T Manyetik Rezonans Görüntüleme kullanma İnsan hipokampal alanlar için Manuel Segmentasyon Protokolü

11:03

Yüksek çözünürlük İn Vivo 3T Manyetik Rezonans Görüntüleme kullanma İnsan hipokampal alanlar için Manuel Segmentasyon Protokolü

Related Videos

10K Views

JoVE logo
Contact Us Recommend to Library
Research
  • JoVE Journal
  • JoVE Encyclopedia of Experiments
  • JoVE Visualize
Business
  • JoVE Business
Education
  • JoVE Core
  • JoVE Science Education
  • JoVE Lab Manual
  • JoVE Quizzes
Solutions
  • Authors
  • Teaching Faculty
  • Librarians
  • K12 Schools
  • Biopharma
About JoVE
  • Overview
  • Leadership
Others
  • JoVE Newsletters
  • JoVE Help Center
  • Blogs
  • JoVE Newsroom
  • Site Maps
Contact Us Recommend to Library
JoVE logo

Copyright © 2026 MyJoVE Corporation. All rights reserved

Privacy Terms of Use Policies
WeChat QR code