Antibiotic Susceptibility Testing: Epsilometer Tests to Determine MIC Values of Two Antibiotics and Evaluate Antibiotic Synergy

1. Epsilometer tests (E-tests)

1. Set-up
   1. Wear gloves and a lab coat
   2. Ready the workspace by sterilizing it using 70% ethanol
   3. Collect Mueller-Hinton agar plates (MHA plates)
2. Preparing a McFarland turbidity standard No. 0.5
   1. Prepare a 1% solution of barium chloride (BaCl₂):
      Add 1 gram anhydrous barium chloride (BaCl₂) in 100 mL distilled water. Vortex well.
   2. Prepare a 1% solution of sulfuric acid (H₂SO₄):
      Add 1 mL of concentrated H₂SO₄ in 99 mL of distilled water. Vortex well.
   3. Prepare a McFarland turbidity standard No. 0.5:
      50 µL BaCl₂ solution in 5 mL of 1% H₂SO₄ solution. Vortex the solution well to get a turbid suspension.
   4. Keep McFarland turbidity standard No. 0.5 in a foil-covered tube. Store at 25°C for a maximum of 6 months. Vortex well to a homogenous solution before use.
3. Preparing MHA plates
   1. Scrape Streptococcus group G bacteria from blood agar plate using a sterile loop. Mix into 1mL of saline, and vortex to a suspension of the bacteria.
   2. Compare the suspension to a McFarland standard No. 0.5 to achieve the same turbidity in order to have the same inoculum size during the experiments. Adjust the concentration using either additional saline or bacteria.
   3. Inoculate the MHA plates by using a sterile cotton tipped applicator. Swab the plate gently to cover the surface. Proceed with one of the three methods described below (1.4-1.6).
4. Single antibiotic resistance test. Streptococcus group G, resistance to penicillin G or gentamicin
   1. Place an E-test strip (either penicillin G or gentamicin) in the center of the MHA plate (Figure 1 A,B).
   2. Incubate for 18-20 hours, 37°C.
   3. Read the results. MIC is measured as the inhibition zone that intersects the graded antibiotic test strip (Figure 1 C,D).

Figure 1: Single E-test. Placement of an E-test strip of A) penicillin G and B) gentamicin on a Mueller Hinton agar plate covered with bacterial colonies of a group G streptococci before (A and B) and after (C and D) overnight incubation at 37°C 5% CO₂. Please click here to view a larger version of this figure.

5. Synergy testing cross-approach. Streptococcus group G, resistance to penicillin G and gentamicin.
   1. Place two E-test strips with different antibiotics (e.g. penicillin G and gentamicin) on the inoculated MHA plate in a cross formation.
      1. For the most accurate results, aim at placing the cross at an approximately 90° angle at the intersection between the scales at their MIC values, previously determined on single antibiotic resistance test (Figure 2 A).
      2. Note that once the strips are placed on the agar plate, they should not be moved, since some antibiotics may already have been absorbed by the plate. Therefore, it is more appropriate to maintain the strips at a slightly wrong angle (e.g. 85°) and up to 1-2 mm from the actual MIC-value. It is advised to run the experiment in triplicate to reduce this problem.
   2. Incubate for 18-20 hours, 37°C.
   3. Read the results. MIC is measured as the inhibition zone that intersects the graded antibiotic test strip on each respective E-test strip (Figure 2 B).
   4. Use the formula for fractional inhibitory concentration (FIC) (Equation 1) in order to determine synergy.

Figure 2: Synergism detection - cross test. Results of antimicrobial synergy testing of MIC of penicillin G and gentamicin on Streptococcus group G before (A) and after (B) incubation overnight at 37°C 5% CO₂. A 90° angle is formed between the two individual MIC-values (penicillin G: 0.094 µg/mL, gentamicin: 8 µg/mL). Please click here to view a larger version of this figure.

6. Synergy testing non-cross approach. Streptococcus group G, resistance to penicillin G and gentamicin.
   1. Place the E-test strip in the center of the MHA plate (Figure 3 A,D).
   2. Mark where the previously determined MIC value was on each strip.
   3. Incubate for 1 hour at room temperature.
   4. Discard the E-test strip for each MHA plate (Figure 3 B,E).
   5. Place the second E-test strip (containing a different antibiotic) on the area of the earlier removed strip respectively so that their MIC values will correspond to the mark and are aligned.
   6. Incubate for 18-20 hours, 37°C.
   7. Read the results. MIC is measured as the inhibition zone that intersects the graded antibiotic test strip on each respective E-test strip (Figure 3 C,F).
   8. In order to determine synergy, the formula for fractional inhibitory concentration (FIC) is used (Equation 1).

Figure 3: Synergism detection - non-cross test. Results of antimicrobial synergy testing of MIC of penicillin G and gentamicin on Streptococcus group G. A) Gentamicin strip (8 µg/mL centered) on top of Streptococcus group G bacteria, B) Removal of gentamicin strip, C) Combined gentamicin / penicillin G strip (0.094 µg/mL centered) on top of Streptococcus group G bacteria, D) Penicillin G strip (0.094 µg/mL centered), E) Removal of penicillin G strip, F) Combined penicillin G / gentamicin strip (8 µg/mL centered) on top of Streptococcus group G bacteria. Please click here to view a larger version of this figure.

2. Broth testing

1. Set-up
   1. Wear gloves and a lab coat
   2. Ready the workspace by sterilizing it using 70% ethanol
   3. Collect 15mL MH broth with 50% lysed horse blood and 20 mg/mL β-NAD (MH-F)
2. (Optional) Perform an E-test [Protocol 1] to determine the MIC on solid medium
   1. While optional, such knowledge will allow for better experimental design (e.g. the concentrations of antibiotics added can be designed to surround the MIC value determined from the plate), improving the chances of a successful experiment.
3. Preparing a bacterial inoculum. As stated above, bacterial concentration can be estimated by OD nm measurements or McFarland turbidity standards
   1. OD600 nm Method
      1. Obtain a bacterial suspension with an established bacterial concentration
      2. Dilute the culture in MH-F broth to achieve an OD600 of 0.003
   2. McFarland turbidity method
      1. Put 15 mL MH-F broth in a sterile tube.
      2. Inoculate the MH-F broth with bacteria (from a plate) to a McFarland level. Vortex the solution vigorously. Pour the solution into a sterile Petri dish.
4. Preparing antibiotics
   1. Determine the concentration of antibiotics desired
      1. Identify the MIC value from the E- test (ex. 0.125 µg/mL for penicillin G and 8 µg/mL for gentamicin)
      2. Multiply the agar plate MIC value by 2⁴-2⁷, corresponding to four-seven 2x serial dilutions. This will be the starting concentration of antibiotics. (ex. for penicillin G, seven 2x serial dilutions: 0.125 µg/mL x 2⁷ = 16 µg/mL; for gentamicin, four 2x serial dilutions 8 µg/mL x 2⁴ = 128 µg/mL
      3. Multiply the desired starting value 100x in order to determine generate a stock concentration of the antibiotics (ex. stocks of 1.6 mg/mL penicillin G and 12.8 mg/mL gentamicin)
   2. Prepare a 100x antibiotic stock concentration accordingly
      1. Dissolve the antibiotics in 10mL autoclaved water, and vortex to generate a stock solution (ex. 16 mg penicillin G and 128 mg gentamicin to create the above stocks)
5. Add bacteria to microplate wells
   1. Aliquot 200 µl MH-F broth containing bacteria inoculum to the wells in the first 3 rows of a 96-well microtiter plate for an experiment in triplicate.
6. Add antibiotics to microplate wells
   1. Add 200 µL extra MH-F broth with bacteria to the first column of wells (A1, B1, C1) to bring the total volume to 400 µL.
   2. Add 4 µL of the stock concentration of antibiotics to the first column of wells. Since the sample contains 400 µL it will result in a 100x dilution of the antibiotics.
   3. Generate a 2x serial dilution by transferring 200 µL bacteria/antibiotics from A1 to A2, all the way to A11. Pipet vigorously between the dilutions. Repeat the step for additional rows.
   4. Remove 200 µL from the column 11 so the final volume in all wells are 200 µL.
   5. Leave the last column (A12, B12, C12) without antibiotics, as controls.
7. Determine MIC values
   1. Incubate the 96-well microtiter plate for 24 hours at 37°C without shaking.
   2. The MIC value is defined as the last well in the dilution series that exhibits no visible growth of bacteria (Figure 4). This value,however, can only be trusted if the original inoculum size was correct.

Figure 4: MIC determination by broth dilution. MIC is here defined as the last well that exhibits clearness (no growth of bacteria) before it changes turbidity. Row are duplicates of the MIC value of penicillin G and row are duplicates of the MIC value of gentamicin, both versus an isolate of Streptococcus group G. A) actual experimental outcome, B) schematic interpretation of the values from A (grey = no growth; white = growth). Please click here to view a larger version of this figure.

Figure 5: Schematic procedure of dilution series to count original bacteria concentration. Dilutions were performed as described (20 µL diluted in 180 µL for a 10x dilution series), and then 10 µL from the rows A-H are plated on two separate blood agar plates as indicated. Please click here to view a larger version of this figure.

8. Determine original inoculum size
   NOTE: Microbroth assays are highly sensitive for the original inoculum size used. An excessive inoculum size will give a false positive result, since the antibiotics added will not be able to inhibit growth any longer at that ratio. Therefore, it is critical to verify how much bacteria have been added to the microwells. While the data will not be available at the point of the experiment (due to the need of 24 hours incubation) it will serve as a control. If the number of added bacteria is within the stated concentration range, the MIC values can be trusted. If the inoculum was too high or too low, the experiment needs to be repeated.
   1. Serially dilute the bacteria
      1. Prepare a 96-well microtiter plate to dilute the original bacterial concentration in order to determine the inoculum size. The optimum is a volume of 200 µL with 10^5-6 bacteria. To perform the dilutions, first aliquot 180 µL sterile PBS to each well in B-H (in triplicate 1-3).
      2. Next, add 100 µl of bacterial solution to A (in triplicate 1-3).
      3. Generate a 10x serial dilution (in triplicate) by transferring 20 µl bacteria from A to B, pipet vigorously. Repeat the steps for C-H.
   2. Plate the bacterial dilutions for inoculum size determination
      1. Mark blood agar plates according to Figure 5.
      2. Transfer 10 µL from the serial dilution to the plate according to Figure 5.
      3. Incubate the plate at 37°C for 20-24 hours.
   3. Determine the bacterial inoculum size
      1. Count bacterial numbers in spots within 5-50 colonies (Figure 6).
      2. Calculate the initial inoculum size by calculating the mean of the triplicate samples, multiply by the dilution factor (e.g. 10x for B samples, 100x for C samples, 1000x for D samples, etc.) and then by 100 to compensate for the spotting volume of 10 µL, resulting in the inoculum size in cfu/mL. If the inoculum is within 10^5-6 cfu/mL the MIC data can be trusted.

Figure 6: Determination of inoculum size. Bacteria inoculated according to figure 5 were incubated for 20-24 hours at 37°C and then counted. Row D has a good number of colonies to count (e.g. 5-50). Samples in A are undiluted, B is diluted 10x, C is diluted 100x, and D is diluted 1000x, and only 10 µL is plated in each spot. Please click here to view a larger version of this figure.