Continuous Monitoring of Biological Noise in Bacteria Using Time-Lapse Microscopy

0 views • 2:35 min • November 28th, 2025

Loading...
$$\rightleftharpoonup{xx}$$ $$\longleftharp{xx}$$, $$\longrightharp{xx}$$,

Begin with a culture plate containing bacteria embedded below an agarose gel pad to immobilize the bacteria and support monolayer growth.

The bacteria constitutively express green fluorescent protein, enabling real-time monitoring of gene expression.

Pour additional agarose gel around the pad to seal the sample and let it solidify at room temperature.

Seal the plate with tape, perforate it to allow gas exchange, and invert it to prevent condensation.

Incubate the plate at a low temperature to stabilize the gel and prevent bacterial division.

Next, apply immersion oil to the objective and place the plate on a confocal microscope stage.

Initiate time-lapse imaging.

As GFP gradually matures, it begins to fluoresce. During cell division, these fluorescent proteins are distributed between daughter cells, causing a drop in fluorescence intensity.

This creates a saw-toothed fluorescence pattern, and differences in this pattern among genetically identical cells in the same environment show biological noise in gene expression.

To image the samples, remove the flask from the water and allow the gel solution to cool to body temperature. Pour three millimeters of the gel onto the perimeter of the sample plate. When the agarose has solidified, seal the plate with tape and use a 25 gauge needle to pierce several holes into the tape.

Then place the plate upside down at four degrees Celsius for at least 30 minutes to allow the agarose to fully solidify, while preventing cell mitosis. Within 24 hours, use a fluorescence confocal microscope to locate the sample at the lowest magnification and engage the automatic focus system of the microscope. Apply oil to the appropriate objective and use the platform controller to move the plate to carefully spread the oil.

Then engage the automatic focus again and follow the default suggestion for Z step cross-sections to image the sample.

05:57

Live-Cell Fluorescence Microscopy to Investigate Subcellular Protein Localization and Cell Morphology Changes in Bacteria

Related Videos

0 Views

06:22

Stochastic Noise Application for the Assessment of Medial Vestibular Nucleus Neuron Sensitivity In Vitro

Related Videos

0 Views

09:20

Reliably Engineering and Controlling Stable Optogenetic Gene Circuits in Mammalian Cells

Related Videos

0 Views

07:31

Live Cell Imaging of Bacillus subtilis and Streptococcus pneumoniae using Automated Time-lapse Microscopy

Related Videos

0 Views

05:02

Microfluidic Time-Lapse Microscopy to Study Antibiotic Persistence in Bacteria

Related Videos

0 Views

03:20

Real-Time Monitoring of Bacterial Growth Using a Microfluidic Microdroplet Culture System

Related Videos

0 Views

02:53

Tracking Bacterial Growth at Single-Cell Resolution in a Microfluidic System

Related Videos

0 Views

10:40

Studying Interactions of Staphylococcus aureus with Neutrophils by Flow Cytometry and Time Lapse Microscopy

Related Videos

0 Views

10:07

Generating Controlled, Dynamic Chemical Landscapes to Study Microbial Behavior

Related Videos

0 Views

08:56

Live-Cell Imaging of the Life Cycle of Bacterial Predator Bdellovibrio bacteriovorus using Time-Lapse Fluorescence Microscopy

Related Videos

0 Views

Last updated: 27 June 2026