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Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
JoVE Journal
Cancer Research
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JoVE Journal Cancer Research
Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
DOI:

09:49 min

July 05, 2019

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Chapters

  • 00:04Title
  • 00:49Random Priming and First Strand cDNA Synthesis
  • 01:55Ligation Step 2 and Bead Purification
  • 04:25First PCR and Bead Purification
  • 05:48Library Quantitation and Sequencing
  • 07:41Assay Data Interpretation
  • 08:39Results: Sample Summary and Fusion Calls
  • 09:27Conclusion

Summary

Automatic Translation

This article details the use of an anchored multiplex polymerase chain reaction-based library preparation kit followed by next-generation sequencing to assess for oncogenic gene fusions in clinical solid tumor samples. Both wet-bench and data analysis steps are described.

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