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JoVE Journal
Biology

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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
 

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

Article DOI: 10.3791/63084-v 10:44 min December 7th, 2021
December 7th, 2021

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Summary

The Inherent Dynamics Visualizer is an interactive visualization package that connects to a gene regulatory network inference tool for enhanced, streamlined generation of functional network models. The visualizer can be used to make more informed decisions for parameterizing the inference tool, thus increasing confidence in the resulting models.

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Inherent Dynamics Visualizer Interactive Application Gene Regulatory Network Inference Pipeline Inference Methods Functional Network Models Visualizing Results Intermediate Results Downstream Steps Exploration Understanding Results IDP Configuration File Parameter Choices Documentation Node Finding Step Type Data File Annotation File Output File Number Process IDVconnection Time Series File Results Folder Number Of Processes DLxJTK Arguments
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