Research Article

Age-Specific Pyroptosis Biomarker Analysis and Non-Pharmacological Intervention in Acute Respiratory Distress Syndrome

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DOI:

10.3791/71443

June 5th, 2026

* These authors contributed equally

In This Article

Summary

This protocol outlines an integrated bioinformatic and machine-learning workflow to identify age-stratified pyroptosis biomarkers in acute respiratory distress syndrome (ARDS), coupled with an in vivo methodology using an LPS-induced rat model to experimentally validate the preliminary efficacy of spectrum energy water and far-infrared radiation.

Abstract

Acute respiratory distress syndrome (ARDS) is a life-threatening inflammatory lung disorder with high morbidity and mortality, in which pyroptosis has emerged as a pivotal pathogenic mechanism. Considering that age-related immune and molecular differences may influence pyroptosis and therapeutic response, this study aimed to identify age-specific pyroptosis-associated biomarkers and evaluate the therapeutic potential of spectrum energy water (SEW) combined with far-infrared radiation (FIR). The protocol's comprehensive workflow encompasses transcriptomic dataset processing, age stratification, machine learning, and immune infiltration analysis to identify age-specific hub genes. This computational phase is followed by in vivo experimental validation using an LPS-induced ARDS rat model, employing histological assessment, ELISA, and Western blotting to rigorously evaluate the SEW+FIR intervention and verify hub gene expression. Sixteen pyroptosis-associated genes were identified, among which AXL and GSDME were predominantly associated with ARDS severity in older patients, whereas SPP1 was more relevant in younger individuals. Distinct immune signatures were observed, with M2 macrophage enrichment and immunosuppression in older patients, contrasted by pro-inflammatory activation in younger ones. Functional analyses implicated these genes in metabolic, inflammatory, and immune regulatory pathways. In vivo, SEW+FIR treatment alleviated lung injury, suppressed the production of inflammatory cytokines (IL-1β, IL-18, IL-6, TNF-α), and modulated the expression of AXL, GSDME, and SPP1. Collectively, these findings underscore age-dependent differences in pyroptosis-related mechanisms in ARDS and identify AXL, GSDME, and SPP1 as preliminary biomarker candidates that warrant further clinical validation. In the current murine experimental model, SEW+FIR demonstrated protective effects by alleviating systemic inflammation and modulating pyroptosis-related signaling, providing foundational in vivo support for its potential as a non-pharmacological adjunctive strategy.

Introduction

Acute lung injury (ALI)/acute respiratory distress syndrome (ARDS) is a severe respiratory disease characterized by an acute onset of severe hypoxemia and non-cardiogenic pulmonary edema, primarily resulting from diffuse alveolar damage1. It can be triggered by a range of pulmonary and extrapulmonary insults. Pulmonary causes include infectious pneumonia, aspiration of gastric contents, and severe thoracic trauma, while extrapulmonary triggers arise from systemic inflammatory responses secondary to non-pulmonary insults, such as sepsis, pancreatitis, non-thoracic trauma, severe burns, massive transfusion, and reperfusion injury following lung t....

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Protocol

All animal experimental procedures were strictly performed in accordance with the guidelines approved by the Experimental Animal Welfare and Ethics Committee of Dongzhimen Hospital, Beijing University of Chinese Medicine (Approval No. 19-54), prior to the commencement of the study.

Data source and data processing
Two gene expression datasets (GSE89953 and GSE116560) were retrieved from the Gene Expression Omnibus (GEO) database20. The dataset GSE89953, which includes whole-alveolar macrophage transcriptomic data from ARDS patients across different age groups, was used for differential expressio....

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Results

Identification of DEGs in GSE89953 different age groups and corresponding functional enrichment analysis
Raw expression data from the GSE89953 dataset were normalized using the normalizeBetweenArrays function in the limma package (Figure 1A), and boxplots before and after normalization confirmed improved consistency across samples. Differential expression analysis based on the normalized matrix identified 228 DEGs (adjusted p < 0.05 using Benjamini-Hochberg c.......

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Discussion

Accumulation of inflammatory injury and immune dysregulation is a hallmark of acute respiratory distress syndrome (ARDS), leading to severe pulmonary damage and high mortality. Due to the complex pathogenesis and lack of effective therapies, identifying precise therapeutic targets is critical to improve outcomes. Emerging evidence suggests that pyroptosis, a form of programmed cell death, plays a central role in ARDS progression. Given that age is an important factor influencing the onset and severity of ARDS, we stratif.......

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Disclosures

The authors have nothing to disclose.

Acknowledgements

The authors would like to thank all study participants. The authors thank AiMi Academic Services (www.aimieditor.com) for English language editing and review services. This research was funded and supported by the Horizontal Research Project of Dongzhimen Hospital, Beijing University of Chinese Medicine (HX-DZM: No.2017005/HX-DZM: No.2017019), the Research Project of Beijing University of Chinese Medicine (2025-JYB-JBGS-034), and the Clinical Research Program of High-level Traditional Chinese Medicine Hospitals funded by the Central Government (DZMG-MLZY-23004).

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Anti-AXL antibodyAbcamab215205
Anti-Caspase-3 antibodyAbcamab184787
Anti-GAPDH antibodyAbcamab8245
Anti-GSDME antibodyAbcamab215191
Anti-SPP1 antibodyAbcamab307994
BiomicroscopeOLYMPUS, JapanBH2
FIR instrumentGuangdong JFC GroupJF-802
Goat Anti-Rabbit IgG H&L (HRP)Abcamab6721
GraphPad Prism 10.1.2GraphPad Software-
High-speed centrifugeThermo, USASorvall ST16R
IL-18 ELISA kitJiangsu Meibiao Biotechnology Co., Ltd.MB-1735B
IL-1β ELISA kitJiangsu Meibiao Biotechnology Co., Ltd.MB-1588B
IL-6 ELISA kitJiangsu Meibiao Biotechnology Co., Ltd.MB-50054A
ImageJNIH-
Lipopolysaccharide (LPS)Sigma, USAL6511
Male SPF Sprague Dawley rats (6-7 weeks)Beijing HFK Bioscience Co., Ltd., ChinaSCXK(Beijing)2019-008 (License)
Microplate reader (Varioskan Flash)Thermo ScientificVarioskan Flash
MicrotomeLEICARM2235
R software (limma, clusterProfiler, WGCNA, glmnet, randomForest)R Foundation for Statistical Computing-
SEW preparation instrumentGuangdong JFC GroupJF-139
SPSS 26.0IBM-
Table balanceShanghai Cany Precision Instruments Co., Ltd.HC·TP11·10
TNF-α ELISA kitJiangsu Meibiao Biotechnology Co., Ltd.MB-50051A
Ultra-low temperature freezerThermo, USAForma 900 Series

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Tags

Pyroptosis BiomarkersAge Specific AnalysisSpectrum Energy WaterFar Infrared RadiationImmune InfiltrationMachine LearningLPS Induced ARDSWestern Blotting

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