Andreas Gnirke Broad Institute of Harvard and Massachusetts Institute of Technology Biography Publications Institution JoVE Articles Andreas Gnirke has not added a biography. If you are Andreas Gnirke and would like to personalize this page please email our Author Liaison for assistance. Publications Genomic Distribution and Inter-sample Variation of Non-CpG Methylation Across Human Cell Types PLoS Genetics. Dec, 2011 | Pubmed ID: 22174693 Hybrid Selection for Sequencing Pathogen Genomes from Clinical Samples Genome Biology. 2011 | Pubmed ID: 21835008 Full-length Transcriptome Assembly from RNA-Seq Data Without a Reference Genome Nature Biotechnology. Jul, 2011 | Pubmed ID: 21572440 Metabolic Labeling of RNA Uncovers Principles of RNA Production and Degradation Dynamics in Mammalian Cells Nature Biotechnology. May, 2011 | Pubmed ID: 21516085 Preparation of Reduced Representation Bisulfite Sequencing Libraries for Genome-scale DNA Methylation Profiling Nature Protocols. Apr, 2011 | Pubmed ID: 21412275 Analyzing and Minimizing PCR Amplification Bias in Illumina Sequencing Libraries Genome Biology. 2011 | Pubmed ID: 21338519 Reference Maps of Human ES and IPS Cell Variation Enable High-throughput Characterization of Pluripotent Cell Lines Cell. Feb, 2011 | Pubmed ID: 21295703 Reprogramming Factor Expression Initiates Widespread Targeted Chromatin Remodeling Cell Stem Cell. Jan, 2011 | Pubmed ID: 21211784 High-quality Draft Assemblies of Mammalian Genomes from Massively Parallel Sequence Data Proceedings of the National Academy of Sciences of the United States of America. Jan, 2011 | Pubmed ID: 21187386 Comparison of Sequencing-based Methods to Profile DNA Methylation and Identification of Monoallelic Epigenetic Modifications Nature Biotechnology. Oct, 2010 | Pubmed ID: 20852635 Quantitative Comparison of Genome-wide DNA Methylation Mapping Technologies Nature Biotechnology. Oct, 2010 | Pubmed ID: 20852634 Strand-specific RNA Sequencing Reveals Extensive Regulated Long Antisense Transcripts That Are Conserved Across Yeast Species Genome Biology. 2010 | Pubmed ID: 20796282 Comprehensive Comparative Analysis of Strand-specific RNA Sequencing Methods Nature Methods. Sep, 2010 | Pubmed ID: 20711195 Targeted Exon Sequencing by In-solution Hybrid Selection Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [et Al.]. Jul, 2010 | Pubmed ID: 20582916 Ab Initio Reconstruction of Cell Type-specific Transcriptomes in Mouse Reveals the Conserved Multi-exonic Structure of LincRNAs Nature Biotechnology. May, 2010 | Pubmed ID: 20436462 Integrative Analysis of the Melanoma Transcriptome Genome Research. Apr, 2010 | Pubmed ID: 20179022 Genome-scale DNA Methylation Mapping of Clinical Samples at Single-nucleotide Resolution Nature Methods. Feb, 2010 | Pubmed ID: 20062050 ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth PLoS Biology. Dec, 2009 | Pubmed ID: 20016685 Targeted Next-generation Sequencing of a Cancer Transcriptome Enhances Detection of Sequence Variants and Novel Fusion Transcripts Genome Biology. 2009 | Pubmed ID: 19835606 Comprehensive Mapping of Long-range Interactions Reveals Folding Principles of the Human Genome Science (New York, N.Y.). Oct, 2009 | Pubmed ID: 19815776 ALLPATHS 2: Small Genomes Assembled Accurately and with High Continuity from Short Paired Reads Genome Biology. 2009 | Pubmed ID: 19796385 High-throughput Bisulfite Sequencing in Mammalian Genomes Methods (San Diego, Calif.). Jul, 2009 | Pubmed ID: 19442738 Ab Initio Construction of a Eukaryotic Transcriptome by Massively Parallel MRNA Sequencing Proceedings of the National Academy of Sciences of the United States of America. Mar, 2009 | Pubmed ID: 19208812 Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing Nature Biotechnology. Feb, 2009 | Pubmed ID: 19182786 The Maternal-effect, Selfish Genetic Element Medea is Associated with a Composite Tc1 Transposon Proceedings of the National Academy of Sciences of the United States of America. Jul, 2008 | Pubmed ID: 18621706 Genome-scale DNA Methylation Maps of Pluripotent and Differentiated Cells Nature. Aug, 2008 | Pubmed ID: 18600261 The Genome of the Model Beetle and Pest Tribolium Castaneum Nature. Apr, 2008 | Pubmed ID: 18362917 Systematic Discovery of Regulatory Motifs in Conserved Regions of the Human Genome, Including Thousands of CTCF Insulator Sites Proceedings of the National Academy of Sciences of the United States of America. Apr, 2007 | Pubmed ID: 17442748 Insights from the Genome of the Biotrophic Fungal Plant Pathogen Ustilago Maydis Nature. Nov, 2006 | Pubmed ID: 17080091 Reduced Representation Bisulfite Sequencing for Comparative High-resolution DNA Methylation Analysis Nucleic Acids Research. 2005 | Pubmed ID: 16224102 DNA Sequence and Analysis of Human Chromosome 18 Nature. Sep, 2005 | Pubmed ID: 16177791 Assessing the Impact of Comparative Genomic Sequence Data on the Functional Annotation of the Drosophila Genome Genome Biology. 2002 | Pubmed ID: 12537575 Oi-C: um método para estudar a arquitetura tridimensional de Genomas. Nynke L. van Berkum*1, Erez Lieberman-Aiden*2,3,4,5, Louise Williams*2, Maxim Imakaev6, Andreas Gnirke2, Leonid A. Mirny3,6, Job Dekker1, Eric S. Lander2,7,8 1Program in Gene Function and Expression, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 2Broad Institute of Harvard and Massachusetts Institute of Technology, 3Division of Health Sciences and Technology, Massachusetts Institute of Technology, 4Program for Evolutionary Dynamics, Department of Organismic and Evolutionary Biology, Department of Mathematics, Harvard University, 5Department of Applied Mathematics, Harvard University, 6Department of Physics, Massachusetts Institute of Technology, 7Department of Systems Biology, Harvard Medical School, 8Department of Biology, Massachusetts Institute of Technology JoVE 1869 Biology
Oi-C: um método para estudar a arquitetura tridimensional de Genomas. Nynke L. van Berkum*1, Erez Lieberman-Aiden*2,3,4,5, Louise Williams*2, Maxim Imakaev6, Andreas Gnirke2, Leonid A. Mirny3,6, Job Dekker1, Eric S. Lander2,7,8 1Program in Gene Function and Expression, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, 2Broad Institute of Harvard and Massachusetts Institute of Technology, 3Division of Health Sciences and Technology, Massachusetts Institute of Technology, 4Program for Evolutionary Dynamics, Department of Organismic and Evolutionary Biology, Department of Mathematics, Harvard University, 5Department of Applied Mathematics, Harvard University, 6Department of Physics, Massachusetts Institute of Technology, 7Department of Systems Biology, Harvard Medical School, 8Department of Biology, Massachusetts Institute of Technology JoVE 1869 Biology