Automated Gel Sequencer

An automated gel sequencer is an instrument that determines DNA sequence information by combining gel electrophoresis with automated fluorescence detection and data analysis. In a typical workflow, chain-terminated DNA fragments carrying fluorescent labels migrate through a polyacrylamide gel according to size; a laser detects the fragments as they pass a reading region, and software converts the color pattern into a chromatogram and sequence. This approach reduces manual gel reading, improves throughput, and supports applications such as gene identification, mutation analysis, cloning verification, and comparative biology. It also provides a foundation for understanding how molecular separation and digital analysis work together in biological research.

Automated Gel Sequencer - Related Videos

Research

JoVE Journal - Environment

Automated Gel Size Selection to Improve the Quality of Next-generation Sequencing Libraries Prepared from Environmental Water Samples

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Cited by 9 •

2015

This manuscript describes an automated gel size selection approach for purifying DNA fragments for next-generation sequencing. The Ranger Technology provides complete automation of the entire process of agarose gel loading, electrophoretic analysis, and recovery of targeted DNA fragments allowing for high-throughput and high quality next-generation sequencing libraries.

Automated Analysis of Dynamic Ca2+ Signals in Image Sequences

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Cited by 28 •

2014

Here a novel region of interest analysis protocol based on sorting best-fit ellipses assigned to regions of positive signal within two-dimensional time lapse image sequences is demonstrated. This algorithm may enable investigators to comprehensively analyze physiological Ca2+ signals with minimal user input and bias.

Education

JoVE Science Education - Basic Biology

Gel Purification

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2023

Gel purification is used to recover DNA fragments after electrophoretic separation. DNA recovery from an agarose gel includes three basic steps: binding, washing and eluting from a silica column. DNA is believed to bind to silica in the presence of high salt via a salt bridge. Following binding, DNA is washed of impurities and eluted under low salt conditions disrupting this interaction. This video goes through a step-by-step, generalized procedure for cutting out a band from the gel, gel...

Education

JoVE Science Education - Basic Biology
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DNA Gel Electrophoresis

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2023

DNA gel electrophoresis is a technique used for the detection and separation of DNA molecules. An electric field is applied to a gel matrix comprised of agarose, and within the gel, charge particles will migrate and separate based on size. The negatively charged phosphates of the DNA backbone cause DNA fragments to move toward the anode - a positively charged electrode. The video explains the mechanism by which DNA fragments are resolved on an agarose gel, and it provides a step-by-step...

Amplicon Sequencing using the Long-Read Sequencing Technologies

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2025

This protocol was optimized for targeted deep sequencing of 18 drug-resistance regions in Mycobacterium tuberculosis using a long-read sequencing platform, followed by analysis with a tuberculosis-specific bioinformatics pipeline designed for long-read data.

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