Hematoxylin Eosin Staining

Hematoxylin and eosin (H&E) staining is a routine histological method that differentially colors tissue components, making cellular architecture visible in tissue sections and supporting medical diagnosis. Hematoxylin, converted to a tissue-binding dye complex, stains nuclei and other basophilic structures blue to purple by associating with negatively charged nucleic acids, while eosin stains proteins in the cytoplasm and extracellular matrix pink to red. By creating contrast between nuclei, cytoplasm, connective tissue, and other structures, H&E staining helps researchers and pathologists assess normal organization, inflammation, degeneration, and tumors. It remains a foundational technique in pathology, biomedical research, and tissue-based disease classification.

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JoVE EoE - Neuropathology

Detection of Brain Atrophy by Hematoxylin and Eosin Staining

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2025

To detect brain atrophy, begin with slides carrying the deparaffinized brain sections from neurodegenerative mouse models at various ages.

Assessing Cerebral Infarctions in a Rat Brain Using Hematoxylin and Eosin Staining

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2025

Immerse the tissue in xylene to dissolve the paraffin.

Hematoxylin and Eosin Staining to Assess Colon Damage in DSS-Induced Colitis

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2025

This video demonstrates the hematoxylin and eosin (H&E) staining method to evaluate colon damage in a murine model of DSS-induced colitis — an inflammatory bowel disease. Upon isolating the colon from a DSS-treated mouse and obtaining sections of the tissue, H&E staining of the sections helps identify the inflammation-mediated tissue damage.

H&E Staining of Paraffin-Embedded Tissue Sections: A Differential Staining Technique to Visualize Liver Tissue Sections Using Combination of Hematoxylin and Eosin Dyes

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2025

In this video, we describe a technique of hematoxylin and eosin staining of paraffin-embedded tissue sections to study their histology. The procedure includes deparaffinization of the tissue followed by staining the cells in the tissue. Upon staining, the nucleus appears distinctly blue, and the proteins in the cytoplasm display pink coloration.

Eosin Staining of Soft-Tissue Samples: An Eosin-Based Procedure for Whole Mouse Kidney Staining to Visualize Specific Tissue Microstructures

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2025

This video demonstrates the procedure for the acidification of the whole mouse kidney with fixation followed by Eosin Y staining. This cytoplasm-specific Eosin staining method helps visualize and identify anatomical structures in the tissue.

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