Achillefs N. Kapanidis

Biological Physics Research Group, University of Oxford

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 38	2014
Publication title Cited by 12	2015

Other Publications

Article	Year
Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances. Biophysical journal\| PubMed ID: 17040983	2007
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell\| PubMed ID: 11893332	2002
The power and prospects of fluorescence microscopies and spectroscopies. Annual review of biophysics and biomolecular structure\| PubMed ID: 12598370	2003
Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods in enzymology\| PubMed ID: 14712697	2003
Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 15175430	2004
Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophysical journal\| PubMed ID: 15653725	2005
Alternating-laser excitation of single molecules. Accounts of chemical research\| PubMed ID: 16028886	2005
Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis. Molecular cell\| PubMed ID: 16285917	2005
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophysical journal\| PubMed ID: 16299085	2006
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science (New York, N.Y.)\| PubMed ID: 17110578	2006
Periodic acceptor excitation spectroscopy of single molecules. European biophysics journal : EBJ\| PubMed ID: 17279362	2007
Red light, green light: probing single molecules using alternating-laser excitation. Biochemical Society transactions\| PubMed ID: 18631150	2008
Reconfigurable, braced, three-dimensional DNA nanostructures. Nature nanotechnology\| PubMed ID: 18654468	2008
Biology, one molecule at a time. Trends in biochemical sciences\| PubMed ID: 19362843	2009
Single-molecule FRET analysis of protein-DNA complexes. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 19378183	2009
A facile method for reversibly linking a recombinant protein to DNA. Chembiochem : a European journal of chemical biology\| PubMed ID: 19449345	2009
DNA monofunctionalization of quantum dots. Chembiochem : a European journal of chemical biology\| PubMed ID: 19554595	2009
Probing biomolecular structures and dynamics of single molecules using in-gel alternating-laser excitation. Analytical chemistry\| PubMed ID: 19863108	2009
Single-molecule DNA biosensors for protein and ligand detection. Angewandte Chemie (International ed. in English)\| PubMed ID: 20077444	2010
Conformational transitions in DNA polymerase I revealed by single-molecule FRET. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 20080740	2010
Characterizing single-molecule FRET dynamics with probability distribution analysis. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 20575136	2010
Surfing on a new wave of single-molecule fluorescence methods. Physical biology\| PubMed ID: 20686191	2010
Monitoring multiple distances within a single molecule using switchable FRET. Nature methods\| PubMed ID: 20818380	2010
Sensing DNA opening in transcription using quenchable Förster resonance energy transfer. Biochemistry\| PubMed ID: 20818825	2010
Defining the limits of single-molecule FRET resolution in TIRF microscopy. Biophysical journal\| PubMed ID: 21044609	2010
Improved temporal resolution and linked hidden Markov modeling for switchable single-molecule FRET. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 21280168	2011
Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis. Biophysical journal\| PubMed ID: 21402040	2011
DAOSTORM: an algorithm for high- density super-resolution microscopy. Nature methods\| PubMed ID: 21451515	2011
Colorful molecular diagnostics. Clinical chemistry\| PubMed ID: 22300628	2012
A protein biosensor that relies on bending of single DNA molecules. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 22368093	2012
Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET. Biophysical journal\| PubMed ID: 22713582	2012
T7 RNA polymerase functions in vitro without clustering. PloS one\| PubMed ID: 22768341	2012
Capturing reaction paths and intermediates in Cre-loxP recombination using single-molecule fluorescence. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23184986	2012
Six steps closer to FRET-driven structural biology. Nature methods\| PubMed ID: 23223168	2012
The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection... Journal of molecular biology\| PubMed ID: 23274143	2013
Non-covalent single transcription factor encapsulation inside a DNA cage. Angewandte Chemie (International ed. in English)\| PubMed ID: 23325751	2013
Single-molecule DNA repair in live bacteria. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23630273	2013
Rotavirus mRNAS are released by transcript-specific channels in the double-layered viral capsid. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 23818620	2013
Multiscale spatial organization of RNA polymerase in Escherichia coli. Biophysical journal\| PubMed ID: 23823236	2013
Conformational landscapes of DNA polymerase I and mutator derivatives establish fidelity checkpoints for nucleotide insertion. Nature communications\| PubMed ID: 23831915	2013
Conformational transitions during FtsK translocase activation of individual XerCD-dif recombination complexes. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24101525	2013
Long-lived intracellular single-molecule fluorescence using electroporated molecules. Biophysical journal\| PubMed ID: 24314075	2013
Studying the organization of DNA repair by single-cell and single-molecule imaging. DNA repair\| PubMed ID: 24629485	2014
In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair. FEBS letters\| PubMed ID: 24859634	2014
Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 25071209	2014
Tethered fluorophore motion: studying large DNA conformational changes by single-fluorophore imaging. Biophysical journal\| PubMed ID: 25185556	2014