Adam R. Abate

Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco

Affiliated withUniversity of California, San Francisco Chan Zuckerberg Biohub University of California San Francisco

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JoVE Journal Publications

ArticleTotal : 6	Year
Publication title Cited by 8	2015
Publication title Cited by 18	2016
Publication title Cited by 31	2018
Publication title Cited by 1	2021
Publication title Cited by 11	2021

Other Publications

Article	Year
PCR-activated cell sorting for cultivation-free enrichment and sequencing of rare microbes. PloS one\| PubMed ID: 25629401	2015
Microfluidic droplet enrichment for targeted sequencing. Nucleic acids research\| PubMed ID: 25873629	2015
Non-coalescence of oppositely charged droplets in pH-sensitive emulsions. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22203968	2012
Electrode-free picoinjection of microfluidic drops. Lab on a chip\| PubMed ID: 22930333	2012
Flow focusing geometry generates droplets through a plug and squeeze mechanism. Lab on a chip\| PubMed ID: 23117576	2012
Adhesive-based bonding technique for PDMS microfluidic devices. Lab on a chip\| PubMed ID: 23282717	2013
Picoinjection enables digital detection of RNA with droplet rt-PCR. PloS one\| PubMed ID: 23658657	2013
Ultrahigh-throughput Mammalian single-cell reverse-transcriptase polymerase chain reaction in microfluidic drops. Analytical chemistry\| PubMed ID: 23885761	2013
Ultrahigh-throughput sorting of microfluidic drops with flow cytometry. Lab on a chip\| PubMed ID: 24146020	2013
DNA sequence analysis with droplet-based microfluidics. Lab on a chip\| PubMed ID: 24185402	2013
Block-and-break generation of microdroplets with fixed volume. Biomicrofluidics\| PubMed ID: 24404013	2013
Adding reagent to droplets with controlled rupture of encapsulated double emulsions. Biomicrofluidics\| PubMed ID: 24404045	2013
Generating electric fields in PDMS microfluidic devices with salt water electrodes. Lab on a chip\| PubMed ID: 24671446	2014
Coaxial flow focusing in poly(dimethylsiloxane) microfluidic devices. Biomicrofluidics\| PubMed ID: 24753732	2014
Identification and genetic analysis of cancer cells with PCR-activated cell sorting. Nucleic acids research\| PubMed ID: 25030902	2014
Accurate microfluidic sorting of droplets at 30 kHz. Lab on a chip\| PubMed ID: 25352174	2015
Rapid modulation of droplet composition with pincer microvalves. Lab on a chip\| PubMed ID: 25385230	2015
Compact and modular multicolour fluorescence detector for droplet microfluidics. Lab on a chip\| PubMed ID: 26032595	2015
Dissecting enzyme function with microfluidic-based deep mutational scanning. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 26040002	2015
Patterning microfluidic device wettability with spatially-controlled plasma oxidation. Lab on a chip\| PubMed ID: 26105774	2015
Enhanced sequencing coverage with digital droplet multiple displacement amplification. Nucleic acids research\| PubMed ID: 26704978	2016
Droplet barcoding for massively parallel single-molecule deep sequencing. Nature communications\| PubMed ID: 27353563	2016
Peering below the diffraction limit: robust and specific sorting of viruses with flow cytometry. Virology journal\| PubMed ID: 27906039	2016
PCR-activated cell sorting as a general, cultivation-free method for high-throughput identification and enrichment of virus hosts. Journal of virological methods\| PubMed ID: 28042018	2017
Sequence specific sorting of DNA molecules with FACS using 3dPCR. Scientific reports\| PubMed ID: 28051104	2017
Genetic interaction mapping with microfluidic-based single cell sequencing. PloS one\| PubMed ID: 28170417	2017
Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding. Scientific reports\| PubMed ID: 28290550	2017
Finding a helix in a haystack: nucleic acid cytometry with droplet microfluidics. Lab on a chip\| PubMed ID: 28540956	2017
Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding. Nature biotechnology\| PubMed ID: 28553940	2017
Printed droplet microfluidics for on demand dispensing of picoliter droplets and cells. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 28760972	2017
Rapid, chemical-free breaking of microfluidic emulsions with a hand-held antistatic gun. Biomicrofluidics\| PubMed ID: 28794817	2017
RNA-aptamers-in-droplets (RAPID) high-throughput screening for secretory phenotypes. Nature communications\| PubMed ID: 28835641	2017
Bulk double emulsification for flow cytometric analysis of microfluidic droplets. The Analyst\| PubMed ID: 29131209	2017
Single-Cell RT-PCR in Microfluidic Droplets with Integrated Chemical Lysis. Analytical chemistry\| PubMed ID: 29256243	2018
Concentric electrodes improve microfluidic droplet sorting. Lab on a chip\| PubMed ID: 29383336	2018
Combined aptamer and transcriptome sequencing of single cells. Scientific reports\| PubMed ID: 29440771	2018
A comparative analysis of single cell and droplet-based FACS for improving production phenotypes: Riboflavin overproduction in Yarrowia lipolytica. Metabolic engineering\| PubMed ID: 29698778	2018
An Oil-Free Picodrop Bioassay Platform for Synthetic Biology. Scientific reports\| PubMed ID: 29784937	2018
Particle-Templated Emulsification for Microfluidics-Free Digital Biology. Analytical chemistry\| PubMed ID: 30033717	2018
Measurement of copy number variation in single cancer cells using rapid-emulsification digital droplet MDA. Microsystems & nanoengineering\| PubMed ID: 30147985	2017
Microfluidic bead encapsulation above 20 kHz with triggered drop formation. Lab on a chip\| PubMed ID: 30362490	2018
Operation of Droplet-Microfluidic Devices with a Lab Centrifuge. Micromachines\| PubMed ID: 30404331	2016
Direct quantification of EGFR variant allele frequency in cell-free DNA using a microfluidic-free digital droplet PCR assay. Methods in cell biology\| PubMed ID: 30473066	2018
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. Nature immunology\| PubMed ID: 30643263	2019
High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq. Lab on a chip\| PubMed ID: 31020292	2019
Human intestinal spheroids cultured using Sacrificial Micromolding as a model system for studying drug transport. Scientific reports\| PubMed ID: 31289365	2019
Uniform, Large-Area, Highly Ordered Peptoid Monolayer and Bilayer Films for Sensing Applications. Langmuir : the ACS journal of surfaces and colloids\| PubMed ID: 31603340	2019
Discovery of Stable and Selective Antibody Mimetics from Combinatorial Libraries of Polyvalent, Loop-Functionalized Peptoid Nanosheets. ACS nano\| PubMed ID: 31789500	2020
Multiplatform Molecular Profiling Reveals Epigenomic Intratumor Heterogeneity in Ependymoma. Cell reports\| PubMed ID: 32023450	2020
Linked optical and gene expression profiling of single cells at high-throughput. Genome biology\| PubMed ID: 32093753	2020
Microfluidic automated plasmid library enrichment for biosynthetic gene cluster discovery. Nucleic acids research\| PubMed ID: 32095820	2020
Microfluidic particle zipper enables controlled loading of droplets with distinct particle types. Lab on a chip\| PubMed ID: 32531004	2020
Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma. Nature communications\| PubMed ID: 32968068	2020
Targeted Single-Cell RNA and DNA Sequencing With Fluorescence-Activated Droplet Merger. Analytical chemistry\| PubMed ID: 33049138	2020
Single-cell mutation analysis of clonal evolution in myeloid malignancies. Nature\| PubMed ID: 33116311	2020
High-Definition Single-Cell Printing: Cell-by-Cell Fabrication of Biological Structures. Advanced materials (Deerfield Beach, Fla.)\| PubMed ID: 33206435	2020
Networks of High Aspect Ratio Particles to Direct Colloidal Assembly Dynamics and Cellular Interactions. Advanced functional materials\| PubMed ID: 33250685	2020
Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification. Scientific reports\| PubMed ID: 33436939	2021
Accurate bulk quantitation of droplet digital PCR. bioRxiv : the preprint server for biology\| PubMed ID: 33469578	2021
High diversity droplet microfluidic libraries generated with a commercial liquid spotter. Scientific reports\| PubMed ID: 33623093	2021
Precision ejection of microfluidic droplets into air with a superhydrophobic outlet. Lab on a chip\| PubMed ID: 33656500	2021