Vitali Sintchenko

Centre for Infectious Diseases and Microbiology, University of Sydney

Affiliated withUniversity of Sydney Westmead hospital ICPMR

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 21	2011
Publication title Cited by 22	2017

Other Publications

Article	Year
Which clinical decisions benefit from automation? A task complexity approach. International journal of medical informatics\| PubMed ID: 12909183	2003
Comparative impact of guidelines, clinical data, and decision support on prescribing decisions: an interactive web experiment with simulated cases. Journal of the American Medical Informatics Association : JAMIA\| PubMed ID: 14527970	2004
Which clinical decisions benefit from automation? A task complexity approach. Studies in health technology and informatics\| PubMed ID: 15460772	2002
Handheld computer-based decision support reduces patient length of stay and antibiotic prescribing in critical care. Journal of the American Medical Informatics Association : JAMIA\| PubMed ID: 15802478	2005
Screening for antibiotic resistant Gram-negative bacteria. The Lancet infectious diseases\| PubMed ID: 16728313	2006
A case of urinary tuberculosis due to Mycobacterium bovis subspecies caprae. Pathology\| PubMed ID: 16916737	2006
Genotyping of Mycobacterium tuberculosis in New South Wales: results from 18 months of a statewide trial. New South Wales public health bulletin\| PubMed ID: 17036086	2006
Utility of genotyping of Mycobacterium tuberculosis in the contact investigation: a decision analysis. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 17161653	2007
Decision complexity affects the extent and type of decision support use. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium\| PubMed ID: 17238436	2006
An outbreak of pulmonary tuberculosis in young Australians. The Medical journal of Australia\| PubMed ID: 17391086	2007
Pathogen profiling for disease management and surveillance. Nature reviews. Microbiology\| PubMed ID: 17487146	2007
Point-of-care testing for community-acquired pneumonia: do we have all the answers? The Medical journal of Australia\| PubMed ID: 17605702	2007
Are we measuring the right end-points? Variables that affect the impact of computerised decision support on patient outcomes: a systematic review. Medical informatics and the Internet in medicine\| PubMed ID: 17701828	2007
Comparison of single- and multilocus sequence typing and toxin gene profiling for characterization of methicillin-resistant Staphylococcus aureus. Journal of clinical microbiology\| PubMed ID: 17715374	2007
Is Bordetella pertussis susceptibility to erythromycin changing? MIC trends among Australian isolates 1971-2006. The Journal of antimicrobial chemotherapy\| PubMed ID: 17827145	2007
Are clinicians' information needs and decision support affected by different models of care? Experimental study. Studies in health technology and informatics\| PubMed ID: 17911845	2007
Developing decision support systems in clinical bioinformatics. Methods in molecular medicine\| PubMed ID: 18453098	2008
Biosurveillance of emerging biothreats using scalable genotype clustering. Journal of biomedical informatics\| PubMed ID: 18723122	2009
Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing. Research in microbiology\| PubMed ID: 18790049	2008
Decision support systems for antibiotic prescribing. Current opinion in infectious diseases\| PubMed ID: 18988320	2008
The re-emergence of pertussis: implications for diagnosis and surveillance. New South Wales public health bulletin\| PubMed ID: 19007547	2008
Towards bioinformatics assisted infectious disease control. BMC bioinformatics\| PubMed ID: 19208185	2009
In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles. BMC bioinformatics\| PubMed ID: 19292914	2009
Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis. Journal of microbiological methods\| PubMed ID: 19341769	2009
Laboratory-guided detection of disease outbreaks: three generations of surveillance systems. Archives of pathology & laboratory medicine\| PubMed ID: 19492884	2009
Identification of non-tuberculous mycobacteria: utility of the GenoType Mycobacterium CM/AS assay compared with HPLC and 16S rRNA gene sequencing. Journal of medical microbiology\| PubMed ID: 19502366	2009
A new multiplex PCR-based reverse line-blot hybridization (mPCR/RLB) assay for rapid staphylococcal cassette chromosome mec (SCCmec) typing. Journal of medical microbiology\| PubMed ID: 19528184	2009
Rolling circle amplification and multiplex allele-specific PCR for rapid detection of katG and inhA gene mutations in Mycobacterium tuberculosis. International journal of medical microbiology : IJMM\| PubMed ID: 19604720	2009
Assignment of Reference 5'-end 16S rDNA Sequences and Species-Specific Sequence Polymorphisms Improves Species Identification of Nocardia. The open microbiology journal\| PubMed ID: 19639036	2009
Influenza outbreak during Sydney World Youth Day 2008: the utility of laboratory testing and case definitions on mass gathering outbreak containment. PloS one\| PubMed ID: 19727401	2009
Commonly used molecular epidemiology markers of Streptococcus agalactiae do not appear to predict virulence. Pathology\| PubMed ID: 19900108	2009
Identification of pathogenic Nocardia species by reverse line blot hybridization targeting the 16S rRNA and 16S-23S rRNA gene spacer regions. Journal of clinical microbiology\| PubMed ID: 19955277	2010
Reverse line blot hybridization and DNA sequencing studies of the 16S-23S rRNA gene intergenic spacer regions of five emerging pathogenic Nocardia species. Journal of medical microbiology\| PubMed ID: 20110385	2010
Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis. Emerging infectious diseases\| PubMed ID: 20113564	2010
A PubMed-wide associational study of infectious diseases. PloS one\| PubMed ID: 20224767	2010
Three-year longitudinal study of genotypes of Mycobacterium tuberculosis in a low prevalence population. Pathology\| PubMed ID: 20350221	2010
Rapid identification of methicillin-resistant Staphylococcus aureus transmission in hospitals by use of phage-derived open reading frame typing enhanced by multiplex PCR and reverse line blo... Journal of clinical microbiology\| PubMed ID: 20519463	2010
Unexpected diversity of staphylococcal cassette chromosome mec type IV in methicillin-resistant Staphylococcus aureus strains. Journal of clinical microbiology\| PubMed ID: 20686095	2010
secA1 gene sequence polymorphisms for species identification of Nocardia species and recognition of intraspecies genetic diversity. Journal of clinical microbiology\| PubMed ID: 20810768	2010
Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection. Molecular biology and evolution\| PubMed ID: 20833694	2011
Editor's choice: Implications of isoniazid resistance in Mycobacterium bovis Bacillus Calmette-GuÃ©rin used for immunotherapy in bladder cancer. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America\| PubMed ID: 21148524	2011
Improved identification of Gordonia, Rhodococcus and Tsukamurella species by 5'-end 16S rRNA gene sequencing. Pathology\| PubMed ID: 21240067	2011
Computational bacterial genome-wide analysis of phylogenetic profiles reveals potential virulence genes of Streptococcus agalactiae. PloS one\| PubMed ID: 21483735	2011
Bug breakfast in the Bulletin: Biosecurity and infectious diseases. New South Wales public health bulletin\| PubMed ID: 21604605	2010
Defining reference sequences for Nocardia species by similarity and clustering analyses of 16S rRNA gene sequence data. PloS one\| PubMed ID: 21687706	2011
Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica serovar Typhimurium. Journal of clinical microbiology\| PubMed ID: 22205813	2012
Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 22293463	2012
Improving resolution of public health surveillance for human Salmonella enterica serovar Typhimurium infection: 3 years of prospective multiple-locus variable-number tandem-repeat analysis (... BMC infectious diseases\| PubMed ID: 22462487	2012
Protocol for a randomised controlled trial examining the impact of a web-based personally controlled health management system on the uptake of influenza vaccination rates. BMC health services research\| PubMed ID: 22462549	2012
Impact of a web-based personally controlled health management system on influenza vaccination and health services utilization rates: a randomized controlled trial. Journal of the American Medical Informatics Association : JAMIA\| PubMed ID: 22582203	2012
Translational web robots for pathogen genome analysis. Microbial informatics and experimentation\| PubMed ID: 22587672	2011
Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments. Microbial informatics and experimentation\| PubMed ID: 22587938	2012
Prospective genotyping of hospital-acquired methicillin-resistant Staphylococcus aureus isolates by use of a novel, highly discriminatory binary typing system. Journal of clinical microbiology\| PubMed ID: 22895043	2012
Francisella tularensis subspecies holarctica, Tasmania, Australia, 2011. Emerging infectious diseases\| PubMed ID: 22931809	2012
Quantitative estimation of the stability of methicillin-resistant Staphylococcus aureus strain-typing systems by use of Kaplan-Meier survival analysis. Journal of clinical microbiology\| PubMed ID: 23100339	2013
Software for selecting the most informative sets of genomic loci for multi-target microbial typing. BMC bioinformatics\| PubMed ID: 23635100	2013
The use of mycobacterial interspersed repetitive unit typing and whole genome sequencing to inform tuberculosis prevention and control activities. New South Wales public health bulletin\| PubMed ID: 23849021	2013
Potent antimycobacterial activity of the pyridoxal isonicotinoyl hydrazone analog 2-pyridylcarboxaldehyde isonicotinoyl hydrazone: a lipophilic transport vehicle for isonicotinic acid hydraz... Molecular pharmacology\| PubMed ID: 24243647	2014
Effectiveness of hospital-wide methicillin-resistant Staphylococcus aureus (MRSA) infection control policies differs by ward specialty. PloS one\| PubMed ID: 24340085	2013
Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia. Emerging infectious diseases\| PubMed ID: 24655754	2014
Pathogen genome bioinformatics. Methods in molecular biology (Clifton, N.J.)\| PubMed ID: 24870136	2014
Improved identification of rapidly growing mycobacteria by a 16S-23S internal transcribed spacer region PCR and capillary gel electrophoresis. PloS one\| PubMed ID: 25013955	2014
Use of the 5' untranslated region and VP1 region to examine the molecular diversity in enterovirus B species. Journal of medical microbiology\| PubMed ID: 25038138	2014
Fluoroquinolone resistance in non-multidrug-resistant tuberculosis-a surveillance study in New South Wales, Australia, and a review of global resistance rates. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases\| PubMed ID: 25086437	2014
Temporal dynamics of Mycobacterium tuberculosis genotypes in New South Wales, Australia. BMC infectious diseases\| PubMed ID: 25149181	2014
Clinical microbiology informatics. Clinical microbiology reviews\| PubMed ID: 25278581	2014
Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB). BMC research notes\| PubMed ID: 25319278	2014
Added value of whole-genome sequencing for management of highly drug-resistant TB. The Journal of antimicrobial chemotherapy\| PubMed ID: 25492392	2015
Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak. Journal of clinical microbiology\| PubMed ID: 25609719	2015
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities. BMC infectious diseases\| PubMed ID: 25887164	2015
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet. Infectious diseases\| PubMed ID: 25936611	2015
The role of pathogen genomics in assessing disease transmission. BMJ (Clinical research ed.)\| PubMed ID: 25964672	2015
Genome sequencing reveals novel deletions associated with secondary resistance to pyrazinamide in MDR Mycobacterium tuberculosis. The Journal of antimicrobial chemotherapy\| PubMed ID: 25977398	2015
Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing. Journal of clinical microbiology\| PubMed ID: 26019201	2015
Genomic Epidemiology of Clostridium botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia. Journal of clinical microbiology\| PubMed ID: 26109442	2015
Editorial: Laboratory preparedness for Ebolavirus disease. Pathology\| PubMed ID: 26126052	2015
Epidemiology of Peripheral Lymph Node Tuberculosis and Genotyping of M. tuberculosis Strains: A Case-Control Study. PloS one\| PubMed ID: 26177546	2015
Genotype heterogeneity of Mycobacterium tuberculosis within geospatial hotspots suggests foci of imported infection in Sydney, Australia. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 26187743	2016
Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage. Journal of clinical microbiology\| PubMed ID: 26311853	2015
It Is Not All about Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the... Journal of clinical microbiology\| PubMed ID: 26311854	2015
Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model. Vaccine\| PubMed ID: 26432908	2015
Antibiotic susceptibility of diverse Mycobacterium abscessus complex strains in New South Wales, Australia. Pathology\| PubMed ID: 26517625	2015
Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic. The Journal of infection\| PubMed ID: 26826518	2016
Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing. PloS one\| PubMed ID: 26938641	2016
Concordance of four commercial enzyme immunoassay and three immunoblot formats for the detection of Lyme borreliosis antibodies in human serum: the two-tier approach remains. Pathology\| PubMed ID: 27020501	2016
dfrA thyA Double Deletion in para-Aminosalicylic Acid-Resistant Mycobacterium tuberculosis Beijing Strains. Antimicrobial agents and chemotherapy\| PubMed ID: 27021327	2016
Nontoxic Metal-Cyclam Complexes, a New Class of Compounds with Potency against Drug-Resistant Mycobacterium tuberculosis. Journal of medicinal chemistry\| PubMed ID: 27214150	2016
Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study. Vaccine\| PubMed ID: 27346304	2016
Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014. BMC microbiology\| PubMed ID: 27629541	2016
SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes. Computational biology and chemistry\| PubMed ID: 27647159	2016
Whole Genome Sequencing Demonstrates Limited Transmission within Identified Mycobacterium tuberculosis Clusters in New South Wales, Australia. PloS one\| PubMed ID: 27737005	2016
16S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis has Potential as an Alternative to High Performance Liquid Chromatography for Identification ... PloS one\| PubMed ID: 27749897	2016
Transmission of multi-drug resistant tuberculosis in Mongolia is driven by Beijing strains of Mycobacterium tuberculosis resistant to all first-line drugs. Tuberculosis (Edinburgh, Scotland)\| PubMed ID: 27865397	2016
Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium. Frontiers in microbiology\| PubMed ID: 28082952	2016
Assignment of recA reference sequence types for enhanced identification of the Burkholderia cepacia complex. Pathology\| PubMed ID: 28193343	2012
Characterisation of the Bordetella pertussis secretome under different media. Journal of proteomics\| PubMed ID: 28242451	2017
Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases\| PubMed ID: 28279807	2017
Francisella tularensis ssp. holarctica in Ringtail Possums, Australia. Emerging infectious diseases\| PubMed ID: 28628459	2017
Drug resistance and Mycobacterium tuberculosis strain diversity in TB/HIV co-infected patients in Ho Chi Minh city, Vietnam. Journal of global antimicrobial resistance\| PubMed ID: 28743648	2017
Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles. Scientific reports\| PubMed ID: 28851865	2017
Genome sequencing links persistent outbreak of legionellosis in Sydney to an emerging clone of Legionella pneumophila ST211. Applied and environmental microbiology\| PubMed ID: 29247056	2017