Herman P. Spaink

Department of Molecular Cell Biology, Leiden University

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 3	Year
Publication title Cited by 234	2012
Publication title Cited by 25	2014
Publication title Cited by 6	2019

Other Publications

Article	Year
Lotus japonicus gene Ljsbp is highly conserved among plants and animals and encodes a homologue to the mammalian selenium-binding proteins. Molecular plant-microbe interactions : MPMI\| PubMed ID: 12026169	2002
Plant-microbe interactions: a receptor in symbiotic dialogue. Nature\| PubMed ID: 12087390	2002
Novel lipochitin oligosaccharide structures produced by Rhizobium etli KIM5s. Carbohydrate research\| PubMed ID: 12110194	2002
Genetic analysis of a pH-regulated operon from Rhizobium tropici CIAT899 involved in acid tolerance and nodulation competitiveness. Molecular plant-microbe interactions : MPMI\| PubMed ID: 12575750	2003
14-3-3 isoforms and pattern formation during barley microspore embryogenesis. Journal of experimental botany\| PubMed ID: 12598573	2003
Specific activation of ERK pathways by chitin oligosaccharides in embryonic zebrafish cell lines. Glycobiology\| PubMed ID: 12881410	2003
Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean. Nucleic acids research\| PubMed ID: 12930950	2003
Auxin distribution in Lotus japonicus during root nodule development. Plant molecular biology\| PubMed ID: 14682616	2003
Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish. Molecular immunology\| PubMed ID: 14687934	2004
Single-molecule imaging of the H-ras membrane-anchor reveals domains in the cytoplasmic leaflet of the cell membrane. Biophysical journal\| PubMed ID: 14695305	2004
Has2 is required upstream of Rac1 to govern dorsal migration of lateral cells during zebrafish gastrulation. Development (Cambridge, England)\| PubMed ID: 14729574	2004
Isoform-specific differences in rapid nucleocytoplasmic shuttling cause distinct subcellular distributions of 14-3-3 sigma and 14-3-3 zeta. Journal of cell science\| PubMed ID: 14996909	2004
Specific recognition of bacteria by plant LysM domain receptor kinases. Trends in microbiology\| PubMed ID: 15120137	2004
DNA computing using single-molecule hybridization detection. Nucleic acids research\| PubMed ID: 15388798	2004
Time-lapse tracking of barley androgenesis reveals position-determined cell death within pro-embryos. Planta\| PubMed ID: 15449059	2005
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant molecular biology\| PubMed ID: 15604716	2004
Programmed cell death during the transition from multicellular structures to globular embryos in barley androgenesis. Planta\| PubMed ID: 15645302	2005
Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection. Molecular immunology\| PubMed ID: 15829308	2005
Single-molecule diffusion measurements of H-Ras at the plasma membrane of live cells reveal microdomain localization upon activation. Journal of cell science\| PubMed ID: 15860728	2005
Genomic annotation and expression analysis of the zebrafish Rho small GTPase family during development and bacterial infection. Genomics\| PubMed ID: 15894457	2005
Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish. American journal of physiology. Regulatory, integrative and comparative physiology\| PubMed ID: 15994372	2005
MyD88 innate immune function in a zebrafish embryo infection model. Infection and immunity\| PubMed ID: 16552074	2006
The production of species-specific highly unsaturated fatty acyl-containing LCOs from Rhizobium leguminosarum bv. trifolii is stringently regulated by nodD and involves the nodRL genes. Molecular plant-microbe interactions : MPMI\| PubMed ID: 16570652	2006
Cloning, functional expression and characterization of Mesorhizobium loti arylamine N-acetyltransferases: rhizobial symbiosis supplies leguminous plants with the xenobiotic N-acetylation pat... Molecular microbiology\| PubMed ID: 16573698	2006
Characterization and expression patterns of the MAPK family in zebrafish. Gene expression patterns : GEP\| PubMed ID: 16774848	2006
DNA computing of solutions to knapsack problems. Bio Systems\| PubMed ID: 16860927	2007
Single-molecule diffusion reveals similar mobility for the Lck, H-ras, and K-ras membrane anchors. Biophysical journal\| PubMed ID: 16920696	2006
Functions of the MAPK family in vertebrate-development. FEBS letters\| PubMed ID: 16949582	2006
Characterization of genomic clones and expression analysis of the three types of superoxide dismutases during nodule development in Lotus japonicus. Molecular plant-microbe interactions : MPMI\| PubMed ID: 17378429	2007
Identification and real-time imaging of a myc-expressing neutrophil population involved in inflammation and mycobacterial granuloma formation in zebrafish. Developmental and comparative immunology\| PubMed ID: 17553562	2008
Discovery of a functional glucocorticoid receptor beta-isoform in zebrafish. Endocrinology\| PubMed ID: 18096659	2008
Model systems for infectious disease and cancer in zebrafish: a report on an EMBO workshop held at the Lorentz Center, Leiden, The Netherlands, July 16-18, 2007. Zebrafish\| PubMed ID: 18284335	2007
Magnetic resonance microscopy of the adult zebrafish. Zebrafish\| PubMed ID: 18377223	2006
Genetic and transcriptome characterization of model zebrafish cell lines. Zebrafish\| PubMed ID: 18377224	2006
ZebraFISH: fluorescent in situ hybridization protocol and three-dimensional imaging of gene expression patterns. Zebrafish\| PubMed ID: 18377226	2006
ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis. BMC genomics\| PubMed ID: 18442396	2008
A spatially restricted increase in receptor mobility is involved in directional sensing during Dictyostelium discoideum chemotaxis. Journal of cell science\| PubMed ID: 18469015	2008
Distinct functions for ERK1 and ERK2 in cell migration processes during zebrafish gastrulation. Developmental biology\| PubMed ID: 18514184	2008
Candidates for membrane progestin receptors--past approaches and future challenges. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP\| PubMed ID: 18602498	2008
Male silver eels mature by swimming. BMC physiology\| PubMed ID: 18616800	2008
Photothermal detection of individual gold nanoparticles: perspectives for high-throughput screening. Chemphyschem : a European journal of chemical physics and physical chemistry\| PubMed ID: 18666264	2008
Analysis of interactions of signaling proteins with phage-displayed ligands by fluorescence correlation spectroscopy. Journal of biomolecular screening\| PubMed ID: 18753688	2008
Transcriptome profiling and functional analyses of the zebrafish embryonic innate immune response to Salmonella infection. Journal of immunology (Baltimore, Md. : 1950)\| PubMed ID: 19380811	2009
Specificity of the zebrafish host transcriptome response to acute and chronic mycobacterial infection and the role of innate and adaptive immune components. Molecular immunology\| PubMed ID: 19409617	2009
Zebrafish development and regeneration: new tools for biomedical research. The International journal of developmental biology\| PubMed ID: 19557689	2009
Deep sequencing of the zebrafish transcriptome response to mycobacterium infection. Molecular immunology\| PubMed ID: 19631987	2009
Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Genome biology\| PubMed ID: 19646228	2009
Single-molecule microscopy reveals membrane microdomain organization of cells in a living vertebrate. Biophysical journal\| PubMed ID: 19686669	2009
Temporal expression of hepatic estrogen receptor 1, vitellogenin1 and vitellogenin2 in European silver eels. General and comparative endocrinology\| PubMed ID: 19766647	2010
Identification of hoxb1b downstream genes: hoxb1b as a regulatory factor controlling transcriptional networks and cell movement during zebrafish gastrulation. The International journal of developmental biology\| PubMed ID: 19876844	2010
Disease modeling in zebrafish: cancer and immune responses--a report on a workshop held in Spoleto, Italy, July 20-22, 2009. Zebrafish\| PubMed ID: 20047471	2009
RNA isolation method for single embryo transcriptome analysis in zebrafish. BMC research notes\| PubMed ID: 20233395	2010
Swimming suppresses hepatic vitellogenesis in European female silver eels as shown by expression of the estrogen receptor 1, vitellogenin1 and vitellogenin2 in the liver. Reproductive biology and endocrinology : RB&E\| PubMed ID: 20302623	2010
Macrophage-specific gene functions in Spi1-directed innate immunity. Blood\| PubMed ID: 20424185	2010
In vivo magnetic resonance imaging to detect malignant melanoma in adult zebrafish. Zebrafish\| PubMed ID: 20515295	2010
Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example. BMC research notes\| PubMed ID: 20626891	2010
Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection. Fish & shellfish immunology\| PubMed ID: 20816807	2011
Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos. Molecular immunology\| PubMed ID: 20851470	2010
Establishing zebrafish as a novel exercise model: swimming economy, swimming-enhanced growth and muscle growth marker gene expression. PloS one\| PubMed ID: 21217817	2010
The epigenetic regulator Histone Deacetylase 1 promotes transcription of a core neurogenic programme in zebrafish embryos. BMC genomics\| PubMed ID: 21226904	2011
Host-pathogen interactions made transparent with the zebrafish model. Current drug targets\| PubMed ID: 21366518	2011
A high-throughput screen for tuberculosis progression. PloS one\| PubMed ID: 21390204	2011
First artificial hybrid of the eel species Anguilla australis and Anguilla anguilla. BMC developmental biology\| PubMed ID: 21396126	2011
Quantification of GPCR internalization by single-molecule microscopy in living cells. Integrative biology : quantitative biosciences from nano to macro\| PubMed ID: 21541374	2011
Zebrafish embryos and larvae: a new generation of disease models and drug screens. Birth defects research. Part C, Embryo today : reviews\| PubMed ID: 21671352	2011
Rapid screening of innate immune gene expression in zebrafish using reverse transcription - multiplex ligation-dependent probe amplification. BMC research notes\| PubMed ID: 21676242	2011
A Î”Raf1-ER-inducible oncogenic zebrafish liver cell model identifies hepatocellular carcinoma signatures. The Journal of pathology\| PubMed ID: 21744342	2011
Identification of common carp innate immune genes with whole-genome sequencing and RNA-Seq data. Journal of integrative bioinformatics\| PubMed ID: 21908900	2011
Infectious disease modeling and innate immune function in zebrafish embryos. Methods in cell biology\| PubMed ID: 21951535	2011
Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda. BMC immunology\| PubMed ID: 22003892	2011
An osteosarcoma zebrafish model implicates Mmp-19 and Ets-1 as well as reduced host immune response in angiogenesis and migration. The Journal of pathology\| PubMed ID: 22297719	2012
Automated whole animal bio-imaging assay for human cancer dissemination. PloS one\| PubMed ID: 22347456	2012
Neutrophil-mediated experimental metastasis is enhanced by VEGFR inhibition in a zebrafish xenograft model. The Journal of pathology\| PubMed ID: 22374800	2012
Primitive Duplicate Hox Clusters in the European Eel's Genome. PloS one\| PubMed ID: 22384188	2012
A full-body transcriptome and proteome resource for the European common carp. BMC genomics\| PubMed ID: 27590662	2016
Pathway analysis of systemic transcriptome responses to injected polystyrene particles in zebrafish larvae. Aquatic toxicology (Amsterdam, Netherlands)\| PubMed ID: 28704660	2017
Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88. Nature communications\| PubMed ID: 30291253	2018