Leonid Peshkin

Department of Systems Biology, Harvard Medical School

Research Area

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JoVE Journal Publications

ArticleTotal : 3	Year
Publication title Cited by 1	2023
Publication title Cited by 1	2024
Publication title	2025

Other Publications

Article	Year
Roundup: a multi-genome repository of orthologs and evolutionary distances. Bioinformatics (Oxford, England)\| PubMed ID: 16777906	2006
Rapidly retargetable approaches to de-identification in medical records. Journal of the American Medical Informatics Association : JAMIA\| PubMed ID: 17600096	2007
Resveratrol delays age-related deterioration and mimics transcriptional aspects of dietary restriction without extending life span. Cell metabolism\| PubMed ID: 18599363	2008
Effects of temperature on gene expression in embryos of the coral Montastraea faveolata. BMC genomics\| PubMed ID: 20030803	2009
A method and server for predicting damaging missense mutations. Nature methods\| PubMed ID: 20354512	2010
Remodeling of the metabolome during early frog development. PloS one\| PubMed ID: 21347444	2011
Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility. Developmental cell\| PubMed ID: 21497761	2011
Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks. Genesis (New York, N.Y. : 2000)\| PubMed ID: 21956895	2012
Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature\| PubMed ID: 21993625	2011
A public resource facilitating clinical use of genomes. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 22797899	2012
Vascular disrupting agent drug classes differ in effects on the cytoskeleton. PloS one\| PubMed ID: 22848372	2012
Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster. Analytical chemistry\| PubMed ID: 23098179	2012
Exploiting polypharmacology for drug target deconvolution. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 24707051	2014
Resveratrol prevents high fat/sucrose diet-induced central arterial wall inflammation and stiffening in nonhuman primates. Cell metabolism\| PubMed ID: 24882067	2014
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database. Current biology : CB\| PubMed ID: 24954049	2014
A noncanonical Frizzled2 pathway regulates epithelial-mesenchymal transition and metastasis. Cell\| PubMed ID: 25417160	2014
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell\| PubMed ID: 26000487	2015
The Nuclear Proteome of a Vertebrate. Current biology : CB\| PubMed ID: 26441354	2015
On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development. Developmental cell\| PubMed ID: 26555057	2015
Hemichordate genomes and deuterostome origins. Nature\| PubMed ID: 26580012	2015
Luteinizing Hormone is an effective replacement for hCG to induce ovulation in Xenopus. Developmental biology\| PubMed ID: 27263125	2017
Integration of mtDNA pseudogenes into the nuclear genome coincides with speciation of the human genus. A hypothesis. Mitochondrion\| PubMed ID: 27979772	2017
A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors. Cell reports\| PubMed ID: 28099853	2017
Transcriptomic insights into genetic diversity of protein-coding genes in X. laevis. Developmental biology\| PubMed ID: 28283406	2017
Data on the time of integration of the human mitochondrial pseudogenes (NUMTs) into the nuclear genome. Data in brief\| PubMed ID: 28702491	2017
Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the egg. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 29183978	2017
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. Science (New York, N.Y.)\| PubMed ID: 29700227	2018
Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. Molecular & cellular proteomics : MCP\| PubMed ID: 31311848	2019
Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration. Cell reports\| PubMed ID: 31644900	2019
Quantitative Proteomics Reveals Remodeling of Protein Repertoire Across Life Phases of Daphnia pulex. Proteomics\| PubMed ID: 31697011	2019
YAP regulates cell size and growth dynamics via non-cell autonomous mediators. eLife\| PubMed ID: 31913124	2020
A cell type annotation Jamboree-Revival of а communal science forum. Genesis (New York, N.Y. : 2000)\| PubMed ID: 32584459	2020
Computationally enhanced quantitative phase microscopy reveals autonomous oscillations in mammalian cell growth. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 33087574	2020
Lack of age-related respiratory changes in Daphnia. Biogerontology\| PubMed ID: 34989913	2022
Intelligent high-throughput intervention testing platform in Daphnia. Aging cell\| PubMed ID: 35195332	2022
Mitochondrial Pseudogenes Suggest Repeated Inter-Species Hybridization among Direct Human Ancestors. Genes\| PubMed ID: 35627195	2022
Developing immortal cell lines from embryos four novel cell lines derived from . Open biology\| PubMed ID: 35857907	2022
Rapamycin treatment during development extends life span and health span of male mice and . Science advances\| PubMed ID: 36112674	2022
Secreted PGK1 and IGFBP2 contribute to the bystander effect of miR-10b gene editing in glioma. Molecular therapy. Nucleic acids\| PubMed ID: 36700043	2023
Effective Rapid Blood Perfusion in . bioRxiv : the preprint server for biology\| PubMed ID: 36778320	2023
Age-associated DNA methylation changes in frogs. Epigenetics\| PubMed ID: 37092296	2023
On standardization of controls in lifespan studies. bioRxiv : the preprint server for biology\| PubMed ID: 37645987	2023
Open Genes-a new comprehensive database of human genes associated with aging and longevity. Nucleic acids research\| PubMed ID: 37665017	2024
On standardization of controls in lifespan studies. Aging\| PubMed ID: 38421245	2024
A new atlas to study embryonic cell types in Xenopus. Developmental biology\| PubMed ID: 38614285	2024
A time-resolved single-cell roadmap of the logic driving anterior neural crest diversification from neural border to migration stages. Proceedings of the National Academy of Sciences of the United States of America\| PubMed ID: 38683994	2024
Short lifespan is one's fate, long lifespan is one's achievement: lessons from Daphnia. GeroScience\| PubMed ID: 38900345	2024
Post-senescence reproductive rebound in Daphnia associated with reversal of age-related transcriptional changes. GeroScience\| PubMed ID: 39460850	2025
Disagreement on foundational principles of biological aging. PNAS nexus\| PubMed ID: 39660064	2024
Differentiation success of reprogrammed cells is heterogeneous in vivo and modulated by somatic cell identity memory. Stem cell reports\| PubMed ID: 40086446	2025
Genome-wide DNA methylation patterns in Daphnia magna are not significantly associated with age. Epigenetics & chromatin\| PubMed ID: 40170124	2025
Sperm derived H2AK119ub1 is required for embryonic development in Xenopus laevis. Nature communications\| PubMed ID: 40188103	2025
On X-ray Sensitivity in Embryogenesis. microPublication biology\| PubMed ID: 40270682	2025
An epigenetic clock for Xenopus tropicalis. npj aging\| PubMed ID: 40404700	2025
Transitions in the proteome and phospho-proteome during Xenopus laevis development. Developmental biology\| PubMed ID: 40466852	2025