Nozomu Yachie

Donnelly Centre & Department of Molecular Genetics, University of Toronto

Affiliated withUniversity of Toronto University of Tokyo Keio University

Research Area

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JoVE Journal Publications

ArticleTotal : 2	Year
Publication title Cited by 13	2012
Publication title Cited by 6	2020

Other Publications

Article	Year
Computational analysis of microRNA targets in Caenorhabditis elegans. Gene\| PubMed ID: 16356665	2006
Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model. Gene\| PubMed ID: 16564143	2006
HybGFS: a hybrid method for genome-fingerprint scanning. BMC bioinformatics\| PubMed ID: 17069662	2006
Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks. Journal of proteome research\| PubMed ID: 17137332	2006
On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli. FEBS letters\| PubMed ID: 17156778	2006
Alignment-based approach for durable data storage into living organisms. Biotechnology progress\| PubMed ID: 17253725	2007
SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level. In silico biology\| PubMed ID: 17274770	2006
In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs. RNA (New York, N.Y.)\| PubMed ID: 17369313	2007
eXpanda: an integrated platform for network analysis and visualization. In silico biology\| PubMed ID: 17688438	2007
Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse. FEBS letters\| PubMed ID: 17692847	2007
Computational analysis of microRNA-mediated antiviral defense in humans. FEBS letters\| PubMed ID: 17825824	2007
Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae. Science (New York, N.Y.)\| PubMed ID: 17947580	2007
Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales. Molecular biology and evolution\| PubMed ID: 18832079	2008
Stabilizing synthetic data in the DNA of living organisms. Systems and synthetic biology\| PubMed ID: 19083123	2008
In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution. Molecular & cellular proteomics : MCP\| PubMed ID: 19136663	2009
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. BMC bioinformatics\| PubMed ID: 20459641	2010
Integrative features of the yeast phosphoproteome and protein-protein interaction map. PLoS computational biology\| PubMed ID: 21298081	2011
Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA. Gene\| PubMed ID: 21338662	2011
Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification. BMC genomics\| PubMed ID: 21846408	2011
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae. Genetics\| PubMed ID: 26936925	2016
Pooled-matrix protein interaction screens using Barcode Fusion Genetics. Molecular systems biology\| PubMed ID: 27107012	2016
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems. Science (New York, N.Y.)\| PubMed ID: 27492474	2016
Robotic crowd biology with Maholo LabDroids. Nature biotechnology\| PubMed ID: 28398329	2017
Systematic analysis of Ca homeostasis in based on chemical-genetic interaction profiles. Molecular biology of the cell\| PubMed ID: 28566553	2017
Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast. G3 (Bethesda, Md.)\| PubMed ID: 30097473	2018
Engineered CRISPR-Cas9 nuclease with expanded targeting space. Science (New York, N.Y.)\| PubMed ID: 30166441	2018
Fast and global detection of periodic sequence repeats in large genomic resources. Nucleic acids research\| PubMed ID: 30304510	2019
: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing. Genetics\| PubMed ID: 30936113	2019
Complete Genome Sequence of sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan. Microbiology resource announcements\| PubMed ID: 31000557	2019
DNA event recorders send past information of cells to the time of observation. Current opinion in chemical biology\| PubMed ID: 31200335	2019
DNA barcodes evolve for high-resolution cell lineage tracing. Current opinion in chemical biology\| PubMed ID: 31212208	2019
The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs. eLife\| PubMed ID: 31454312	2019
Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network. Cell systems\| PubMed ID: 31668799	2020
A genome-scale CRISPR/Cas9 knockout screening reveals SH3D21 as a sensitizer for gemcitabine. Scientific reports\| PubMed ID: 31844142	2019