Commensal Biofilm

Commensal biofilms are structured communities of resident microorganisms that attach to a host surface and live within a self-produced extracellular matrix, where they can contribute to normal biology without typically causing disease. Initial adhesion is followed by microbial growth, matrix production, cell-to-cell signaling, and formation of chemical and oxygen gradients that organize the community and influence competition with invading microbes. In biology, studying these biofilms helps explain colonization resistance, host-microbe interactions, and microbiome stability, while informing research on oral, intestinal, and skin ecosystems and strategies for restoring beneficial microbial communities.

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Research

JoVE EoE - Rodent Models

Swab-based Conjunctival Commensal Bacteria Isolation: A Technique to Isolate Commensal Bacteria from Conjunctiva of Murine Model

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2025

This video describes a swab-based technique to isolate viable commensal bacteria from the ocular conjunctiva. The technique can be used to profile the commensal bacterial microbiome of the conjunctiva, which plays a defensive role against pathogens.

Growth of Mycobacterium tuberculosis Biofilms

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Cited by 79 •

2012

Mycobacterium tuberculosis forms drug tolerant biofilms when cultured in certain conditions. Here we describe methods for culturing M. tuberculosis biofilms and determining the frequency of drug tolerant persisters. These protocols will be useful for further studies into the mechanisms of drug tolerance in M. tuberculosis.

Methodologies for Studying B. subtilis Biofilms as a Model for Characterizing Small Molecule Biofilm Inhibitors

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Cited by 28 •

2016

This study presents the development of reproducible methodologies to study biofilm inhibitors and their effects on Bacillus subtilis multicellularity.

Microtiter Dish Biofilm Formation Assay

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Cited by 2235 •

2011

The assay describes a rapid means to measure early biofilm formation in bacteria and fungi. This method uses a microtiter plate as the substratum for microbial biofilm formation, and the biofilm is visualized using crystal violet strain. The assay provides either a qualitative or quantitative assay for early biofilm formation.

Remote Magnetic Actuation of Micrometric Probes for in situ 3D Mapping of Bacterial Biofilm Physical Properties

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Cited by 6 •

2014

This paper shows an original methodology based on the remote actuation of magnetic particles seeded in a bacterial biofilm and the development of dedicated magnetic tweezers to measure in situ the local mechanical properties of the complex living material built by micro-organisms at interfaces.

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