Ultramicrotome

An ultramicrotome is a precision instrument that cuts extremely thin sections of biological specimens for high-resolution microscopy. It works by advancing an embedded sample in carefully controlled increments against a glass or diamond knife, producing sections typically tens to hundreds of nanometers thick; resin embedding provides the stability needed for cutting. In biology, ultramicrotomy prepares tissues, cells, and organelles for transmission electron microscopy and other imaging methods, allowing researchers to examine ultrastructural features such as membranes, ribosomes, and intracellular compartments. The technique supports studies of cell organization, pathology, development, and tissue architecture at resolutions beyond conventional light microscopy.

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JoVE EoE - Neuroimaging

Ultrastructural Analysis of a Mouse Brain Section Using Transmission Electron Microscopy

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2025

Source: Lutz, D., et.al. Assessment of Ultrastructural Neuroplasticity Parameters After In Utero Transduction of the Developing Mouse Brain and Spinal Cord. J. Vis. Exp. (2019).This video demonstrates the preparation and transmission electron microscopy (TEM) analysis of a brain section from a mouse pup. The protocol starts with osmium tetroxide-fixed tissue embedded in resin, followed by precise trimming to isolate the region of interest and ultramicrotomy to produce semithin and ultrathin...

Imaging of Neuronal Mitochondria Using a Serial Block-Face Scanning Electron Microscope

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2025

Source: Mukherjee, K., et. al. Analysis of Brain Mitochondria Using Serial Block-Face Scanning Electron Microscopy. J. Vis. Exp. (2016)This video demonstrates the preparation, imaging, and analysis of mouse brain tissue using a serial block-face scanning electron microscope (SBFSEM) to visualize mitochondrial ultrastructure, enabling precise mapping of their morphology and spatial distribution in axonal and dendritic neuronal compartments.

Analysis of Brain Mitochondria Using Serial Block-Face Scanning Electron Microscopy

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Cited by 32 •

2016

Mitochondrial visualization and analysis from mammalian brain tissue is a challenging task. Here, we describe how three dimensional (3D) reconstruction analysis from the serial block-face scanning electron microscopy (SBFSEM) can be used to gain insights on the morphological and volumetric analysis of this critical energy generating organelle.

An Alternative Approach for Sample Preparation with Low Cell Number for TEM Analysis

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Cited by 9 •

2016

Here, we present a protocol to prepare samples with low cell numbers for transmission electron microscopy (TEM) analysis.

Preparation and Observation of Thick Biological Samples by Scanning Transmission Electron Tomography

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Cited by 9 •

2017

This report describes a sample preparation protocol and specific imaging conditions for performing scanning transmission electron tomography of thick biological specimens.

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