Z-domain Binding

Z-domain binding is the selective molecular interaction between a compact engineered protein domain and a target protein, most commonly the Fc region of immunoglobulin G (IgG). The Z domain forms a three-helix bundle whose surface recognizes the interface between IgG constant regions through complementary noncovalent interactions, enabling stable and reversible complex formation. This affinity is used in antibody purification, immunoassays, biosensors, and protein immobilization, where Z-domain ligands capture IgG from complex mixtures. Studying this interaction also supports protein engineering by helping researchers design affinity reagents with controlled specificity, stability, and elution behavior.

Z-domain Binding - Related Videos

Research

JoVE Journal - Bioengineering

Polyelectrolyte Complex for Heparin Binding Domain Osteogenic Growth Factor Delivery

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Cited by 2 •

2016

Self-assembled polyelectrolyte complexes (PEC) fabricated from heparin and protamine were deposited on alginate beads to entrap and regulate the release of osteogenic growth factors. This delivery strategy enables a 20-fold reduction of BMP-2 dose in spinal fusion applications. This article illustrates the benefits and fabrication of PECs.

Education

JoVE Core - Molecular Biology

Conservation of Protein Domains Over Different Proteins

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2020

Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms. A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to form...

Method for Efficient Refolding and Purification of Chemoreceptor Ligand Binding Domain

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Cited by 5 •

2017

A procedure is presented for the refolding of the dCACHE periplasmic ligand binding domain of Campylobacter jejuni chemoreceptor Tlp3 from inclusion bodies and the purification to yield milligram quantities of protein.

Production, Crystallization, and Structure Determination of the IKK-binding Domain of NEMO

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Cited by 5 •

2019

We describe protocols for the structure determination of the IKK-binding domain of NEMO by X-ray crystallography. The methods include protein expression, purification and characterization as well as strategies for successful crystal optimization and structure determination of the protein in its unbound form.

Conserved Binding Sites

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2020

Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function. Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally analyses the...

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