Bacterial Cell Tracking

Bacterial cell tracking is the measurement of individual bacterial positions, movement, growth, and interactions over time, providing a dynamic view of infection that population-level assays can miss. Researchers typically label bacteria with fluorescent proteins or dyes, image them using time-lapse microscopy, and apply automated image analysis to follow cells in culture, tissues, or host cells. In immunology and infection research, tracking reveals how bacteria migrate, divide, form microcolonies, evade immune cells, or respond to antimicrobial treatment. These observations help connect bacterial behavior with disease progression and support the development of targeted therapies, improved infection models, and quantitative approaches to host-pathogen biology.

Bacterial Cell Tracking - Related Videos

Research

JoVE EoE - Bacterial Growth and Techniques

Tracking Bacterial Growth at Single-Cell Resolution in a Microfluidic System

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2025

Source: Cabeen, M. T., et al. Single-cell Microfluidic Analysis of Bacillus subtilis. J. Vis. Exp. (2018)The video demonstrates the use of a microfluidic device to observe bacterial growth at the single-cell level. It showcases how non-motile bacterial cells, confined within micro-scale trenches, are continuously nourished and imaged under a fluorescence microscope. The setup enables real-time visualization of cell division and lineage tracking across multiple generations.

Tracking Bacterial Infection Dynamics in a Mouse Using Bioluminescence

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2025

Source: Valentine, M. E., et al. Generation of In-Frame Gene Deletion Mutants in Pseudomonas aeruginosa and Testing for Virulence Attenuation in a Simple Mouse Model of Infection. J. Vis. Exp. (2020)This video demonstrates the use of bioluminescence to visualize and compare the in vivo behavior of virulent and attenuated bacterial strains in mice. It outlines the preparation of bioluminescent bacterial suspensions and their intraperitoneal injection into mice. The virulent strain exhibits...

Microfluidic Patterning and Fluorescence-Based Tracking of Single-Cell Bacterial Growth

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2025

Source: Pioli, R., et al., Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly. J. Vis. Exp. (2021)This video demonstrates the method of capturing single fluorescently tagged Escherichia coli (E. coli) cells in microfluidic traps using a carbon-free suspension and controlled flow, followed by nutrient addition to trigger growth and fluorescence imaging of microcolonies.

Research

JoVE Journal - Immunology and Infection
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Visualizing Protein-DNA Interactions in Live Bacterial Cells Using Photoactivated Single-molecule Tracking

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Cited by 38 •

2014

Photoactivated localization microscopy (PALM) combined with single-molecule tracking allows direct observation and quantification of protein-DNA interactions in live Escherichia coli cells.

Reporter Enzyme Fluorescence Imaging for In Vivo Tracking of Bacterial Infection

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2025

This video demonstrates the reporter enzyme fluorescence (REF) imaging for in vivo detection of Mycobacterium tuberculosis infection. The infected mice are intraperitoneally injected with a substrate for REF imaging. Upon being hydrolyzed by bacterial β-lactamase enzyme, the substrate emits fluorescence, the detection of which aids evaluation of infection.

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