Single Cell Tracking

Single-cell tracking is a quantitative method for following individual cells over time, revealing behaviors that population-level measurements can conceal. Using time-lapse imaging, image analysis identifies cells in successive frames and links their positions to reconstruct trajectories, allowing researchers to measure migration, division, survival, and changes in cell state. In medicine, this approach helps characterize tumor-cell movement, immune-cell responses, infection dynamics, and responses to drugs while accounting for cellular heterogeneity. By connecting cell behavior with treatment conditions or disease progression, single-cell tracking supports more precise disease models, biomarker discovery, and evaluation of therapeutic strategies.

Single Cell Tracking - Related Videos

Research

JoVE EoE - Bacterial Growth and Techniques

Tracking Bacterial Growth at Single-Cell Resolution in a Microfluidic System

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2025

Source: Cabeen, M. T., et al. Single-cell Microfluidic Analysis of Bacillus subtilis. J. Vis. Exp. (2018)The video demonstrates the use of a microfluidic device to observe bacterial growth at the single-cell level. It showcases how non-motile bacterial cells, confined within micro-scale trenches, are continuously nourished and imaged under a fluorescence microscope. The setup enables real-time visualization of cell division and lineage tracking across multiple generations.

Research

JoVE Journal - Neuroscience
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Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations

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Cited by 12 •

2017

A robust protocol to monitor neural populations by time-lapse video-microscopy followed by software-based post-processing is described. This method represents a powerful tool to identify biological events in a selected population during live imaging experiments.

Live Imaging and Single-Cell Tracking to Monitor Neural Lineage in Adult Neural Stem Cells

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2025

Source: Gómez-Villafuertes, R., et. al., Live Imaging Followed by Single Cell Tracking to Monitor Cell Biology and the Lineage Progression of Multiple Neural Populations. J. Vis. Exp. (2017) The video demonstrates the process of preparing, imaging, and tracking adult neural stem cells in real time to study cellular behaviors, including division and differentiation.

Visualizing Protein-DNA Interactions in Live Bacterial Cells Using Photoactivated Single-molecule Tracking

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Cited by 32 •

2014

Photoactivated localization microscopy (PALM) combined with single-molecule tracking allows direct observation and quantification of protein-DNA interactions in live Escherichia coli cells.

Research

JoVE Journal - Biology
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Live-Cell Imaging and Single-Cell Tracking to Monitor Clonal Dynamics and Fate Transitions in Human and Murine Intestinal Organoids

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2026

We describe confocal imaging and tracking pipelines applied to two reporter strategies: mosaic organoids for resolving individual cell behavior and fate reporter organoids for monitoring cell type transitions in human and murine intestinal organoids.

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