Aptamer Selection

Aptamer selection is a method for identifying short, single-stranded DNA or RNA molecules that bind a chosen molecular target with high affinity and specificity. Typically, a randomized nucleic-acid library is exposed to the target, unbound sequences are removed, bound candidates are recovered and amplified, and repeated enrichment cycles, often including counter-selection, isolate the best binders. In neuroscience, selected aptamers can recognize neuronal proteins, receptors, metabolites, or disease-associated biomarkers, supporting molecular detection, imaging, targeted delivery, and investigation of neural signaling. Because aptamers are chemically synthesized and readily modified, they provide adaptable tools for studying brain disease and developing precise diagnostic or therapeutic platforms.

Aptamer Selection - Related Videos

Research

JoVE Journal - Biology
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Primer-Free Aptamer Selection Using A Random DNA Library

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Cited by 20 •

2010

SELEX protocols comprise multiple rounds of selection, each of which require regeneration of bound ligands, which in turn require fixed primer sequences flanking the random library regions. These fixed primer sequences can interfere with the selection process (false positives and negatives). Here we present a primer-free protocol.

Research

JoVE Journal - Biology
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A Method for Selecting Structure-switching Aptamers Applied to a Colorimetric Gold Nanoparticle Assay

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Cited by 17 •

2015

A protocol is provided to select structure-switching aptamers for small molecule targets based on a tunable stringency magnetic bead selection method. Aptamers selected with structure-switching properties are beneficial for assays that require a conformational change to signal the presence of a target, such as the described gold nanoparticle assay.

Research

JoVE Journal - Neuroscience

Selection of Aptamers for Amyloid β-Protein, the Causative Agent of Alzheimer's Disease

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Cited by 27 •

2010

Aptamers are short ribo-/deoxyribo-oligonucleotides selected by in-vitro evolution methods based on affinity for a specific target. Aptamers are molecular recognition tools with versatile therapeutic, diagnostic, and research applications. We demonstrate methods for selection of aptamers for amyloid β-protein, the causative agent of Alzheimer's disease.

Mapping the Binding Site of an Aptamer on ATP Using MicroScale Thermophoresis

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Cited by 12 •

2017

MicroScale Thermophoresis (MST) is a sensitive technology to characterize aptamer-target interactions. This manuscript describes an MST protocol to characterize aptamer-small molecule interactions.

In Vitro Selection of Aptamers to Differentiate Infectious from Non-Infectious Viruses

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Cited by 1 •

2022

We provide a protocol that can be generally applied to select aptamers that bind to infectious viruses only and not to viruses that have been rendered non-infectious by a disinfection method or to any other similar viruses. This opens the possibility of determining infectivity status in portable and rapid tests.

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