Tissue-associated Bacteria

Tissue-associated bacteria are bacterial populations that attach to, colonize, or persist within host tissues, where their location shapes interactions with immune cells and surrounding cells. They establish these associations through processes such as adhesion to host surfaces, invasion or retention within tissue niches, and adaptation to local nutrients, oxygen levels, and antimicrobial defenses; in turn, bacterial molecules can activate innate immune receptors and influence inflammation. Studying tissue-associated bacteria helps distinguish transient microbes from persistent colonizers and clarifies how spatial organization affects infection, immune regulation, and disease progression. These insights support tissue-based sampling, host-microbe research, and development of targeted antimicrobial or immunomodulatory strategies.

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Immunohistochemical Detection of Pathogenic Bacteria in Human Brain Tissue

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2025

To detect these bacteria, take a deparaffinized, rehydrated, bacteria-infected human brain section with exposed protein antigens and inactivated endogenous phosphatase.

Immunostaining of Bacteria-Filled Microlesions in a Mouse Cardiac Tissue Section for Imaging

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2026

Source: Brown, A. O., and Orihuela, C. J. Visualization of Streptococcus pneumoniae within Cardiac Microlesions and Subsequent Cardiac Remodeling. J. Vis. Exp. (2015)The video demonstrates the immunostaining of chemically fixed mouse cardiac tissue sections to visualize pathogenic bacteria localized within infection-induced microlesions. The process includes tissue washing, membrane permeabilization, blocking of nonspecific sites, antibody labeling, nuclear counterstaining, and confocal...

In Situ Detection of Bacteria in Mouse Gingival Tissue Sections

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2026

Source: Choi, Y. S., et al. In Situ Detection of Bacteria within Paraffin-embedded Tissues Using a Digoxin-labeled DNA Probe Targeting 16S rRNA. J. Vis. Exp. (2015).This video demonstrates the in situ detection of bacteria in mouse gingival tissue sections using digoxin-labeled DNA probes targeting bacterial DNA. The section is incubated with the probe. Alkaline phosphatase-conjugated antibodies specific to digoxin are added. Endogenous phosphatases are inactivated, and a colored precipitate is...

Extraction of Genomic DNA from Plant Leaf Tissue Infected with Pathogenic Bacteria

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2025

Source: Gulla, S., et al. Multi-locus Variable-number Tandem-repeat Analysis of the Fish-pathogenic Bacterium Yersinia ruckeri by Multiplex PCR and Capillary Electrophoresis. J. Vis. Exp. (2019).This protocol extracts genomic DNA from Yersinia ruckeri by suspending isolated colonies in ultrapure water and applying heat to lyse the cells. Centrifugation separates the DNA-containing supernatant from cell debris, yielding template DNA suitable for PCR-based genotyping and epidemiological analysis.

Characterization and Functional Prediction of Bacteria in Ovarian Tissues

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Cited by 1 •

2021

Immunohistochemistry staining and 16S ribosomal RNA gene (16S rRNA gene) sequencing were performed in order to discover and distinguish bacteria in cancerous and noncancerous ovarian tissues in situ. The compositional and functional differences of the bacteria were predicted by using BugBase and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt).

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